Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1313 ATGGAATCTTGGAGTTACGCCTCAGAAGAGAAAGGCTATGTGTTTTCTGATGAAATGGATTTCTCACTGGATGCATATATGAGAGGTAGAAGAGCAATGGTTGAATGGGACAGTAAAGCCTCTTATATCTTTGAGAAAGATGGGTTTGTTTCAGATAAAGAGGTAATTAAAAGCGTGGAGTTTGTGGACTTGGGGTTTCCTGATTTGTTCAGGAGGCCTGTTCGTGGTAGCCAGCCATTGGAAGCATCAAACTGTGAACAAGACAGCGATTCTAGTAAGAAAGTTAATTCCTCTCCTCATGTTGCTCTAAATTCACCTTCGGGAGAAGTAGAGTCTGAGTCAAGGCATTCATGTTCTCTAGTTGAATCTAAGATTCATGATTCTTCACTGATTGATTTAAAGCTAGGGAGATTAGGAGATTGTAAAGATGCAAGTAGTGGTAAAAATGACAATGAGGGGTTCACTTTTCAACCTATGTATCCGGCCACGCTTACAAAGAGAGCTCGCACTTCCAGCTTACCGACTCAAACACCTGTCTGTCAAGTTTATGGTTGTAACAAGGATCTTAGCTCCTCAAAAGAGTACCACAAAAGGCACAAAGTTTGTGATCTTCATTCCAAGACAGCCAAAGTTATTGTTAATGGCATTGAACAGAGGTTTTGTCAACAGTGCAGCAGGTTTCATTTGCTAGCTGAGTTTGATGATGGCAAGCGCAGTTGTCGTAGACGCCTAGCTGGACACAATGAACGTCGAAGGAAGCCTCAGTTTGATTACATCTCTAGTAAACCACAGAAGATACTGCAGTCATGTCAAGGTACCAAATATTTCGGGGCTTCATTACAGAAGAGACCCCAGTTTGCCTTTCACGACATGTTTCAAAGTGGCATTTTTTACCCGGGAAAGTATGAACAAAGCAATCAGATTGGACACATCAAATTTGAAGATGAATCAATTTACAGTTCTCAATTAGCAGTACCCATAACAAATGGTCAAGAGTTATCCAGGGCCTCCAACTCCAGAAGTTGTGCTCTCTCTCTTCTGTCAGCTCAGTCACAGGATCTAACATTCTACTCAGCTGGTTCCCTTATTTCTCAAGGCATCTGCGCACTGCACAGTGATGGCCAAGTTTCTGAAACACCTTTTGGGGTAAGCTCTCTGGACAAATATGTCCCAAGTCAGTCCTTTTCACGTGAGATAAACTCTGTGGAAGTTACCAAGAACAGACCCATAATGCCTTCTGATGCTGGTCATGCTCTTCAACTTGAAGTCCATGGAGATGATACTTACAAACCATCAGATTTGTTAAATGCCAAACATCATTTTCCTGTTGAACATGTTTCCACTGTTGATCTGTTCCAATTGTCATCGCATCTTCAAAGGGTGGAGCAGCAAAGAAATTCTCTTCAAGTGAAGCACGAAAATGAGGACAGCTGTTTTTTTCCAACCATGTGA 1452 0.4187 MESWSYASEEKGYVFSDEMDFSLDAYMRGRRAMVEWDSKASYIFEKDGFVSDKEVIKSVEFVDLGFPDLFRRPVRGSQPLEASNCEQDSDSSKKVNSSPHVALNSPSGEVESESRHSCSLVESKIHDSSLIDLKLGRLGDCKDASSGKNDNEGFTFQPMYPATLTKRARTSSLPTQTPVCQVYGCNKDLSSSKEYHKRHKVCDLHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQFDYISSKPQKILQSCQGTKYFGASLQKRPQFAFHDMFQSGIFYPGKYEQSNQIGHIKFEDESIYSSQLAVPITNGQELSRASNSRSCALSLLSAQSQDLTFYSAGSLISQGICALHSDGQVSETPFGVSSLDKYVPSQSFSREINSVEVTKNRPIMPSDAGHALQLEVHGDDTYKPSDLLNAKHHFPVEHVSTVDLFQLSSHLQRVEQQRNSLQVKHENEDSCFFPTM 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1313 483 SUPERFAMILY SBT domain 178 259 IPR036893 GO:0003677|GO:0005634
Prci5g1313 483 MobiDBLite consensus disorder prediction 80 114 - -
Prci5g1313 483 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 98 263 IPR044817 GO:0003677
Prci5g1313 483 Pfam SBP domain 180 253 IPR004333 GO:0003677
Prci5g1313 483 ProSiteProfiles Zinc finger SBP-type profile. 177 254 IPR004333 GO:0003677
Prci5g1313 483 FunFam Squamosa promoter-binding-like protein 14 171 241 - -
Prci5g1313 483 Gene3D - 171 241 IPR036893 GO:0003677|GO:0005634
Prci5g1313 483 MobiDBLite consensus disorder prediction 77 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1313 Prci-Chr5 32483597 32488848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1313 131 481 SBP-box Gene Family AT1G69170 38.375 7.25e-60 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Prci5g1313 SBP 3.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1313 - - gmx:100797372 611.683