Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1311 ATGGGAAGAGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAATCGGCAAGTGACTTTCTCCAAAAGGAGAAATGGATTGTTCAAGAAAGCTCATGAGATCTCTGTCCTCTGCGACGCTGAGGTCGCTCTTATTGTCTTCTCCCACAAAGGAAAGCTCTTTGAGTATTCCACTGATTCTTGCATGGAGAAGATTCTGGAACGCCATGAAAGGTATGCGTATGCAGAGAGACAGCTAGCAGGAGAAAATGATAATTCTGAGTCACAGGAAAACTGGACCATTGAATATTCTAGACTCAAAGCTAAGATTGACCTTTTGCAGAGAAACCATAGGCACTATGTGGGAGAAGATCTGGGTTCTTTGAGCCTCAAAGAGCTGCACAGTCTGGAGCAGCAGCTTGATACTTCCATCAAACAAATTCGGACACGCAAAAACCAGCTGATTTATGAGTCCATCGCGGAGCTTCAGAAAAAGGAGAAAGTGATACAGGAACAGAATAGCATGCTGGCAAAGAAGATAAAGGAGAAAGAGAAGGCGGCGGCAACACAGCATATGACATGGGAACACCAAAACCTTGGAGCACCTAATTCATCTTATTTACTCCCTCCTCCTCCACTTCCCACTCTCCACATCGGAGGGAATTACCGAGAGGAAACTGCGGAAGCAGAAAGGAACGAGCTTGACCTAACCCTGGAGCCACTCTATTCCTGCAACCTCGGATGTTATTAA 732 0.4563 MGRGRVQLKRIENKINRQVTFSKRRNGLFKKAHEISVLCDAEVALIVFSHKGKLFEYSTDSCMEKILERHERYAYAERQLAGENDNSESQENWTIEYSRLKAKIDLLQRNHRHYVGEDLGSLSLKELHSLEQQLDTSIKQIRTRKNQLIYESIAELQKKEKVIQEQNSMLAKKIKEKEKAAATQHMTWEHQNLGAPNSSYLLPPPPLPTLHIGGNYREETAEAERNELDLTLEPLYSCNLGCY 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1311 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci5g1311 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci5g1311 243 Coils Coil 153 173 - -
Prci5g1311 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci5g1311 243 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Prci5g1311 243 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Prci5g1311 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci5g1311 243 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci5g1311 243 Pfam K-box region 86 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci5g1311 243 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Prci5g1311 243 Coils Coil 90 110 - -
Prci5g1311 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 172 - -
Prci5g1311 243 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Prci5g1311 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci5g1311 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci5g1311 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1311 Prci-Chr5 32452974 32458219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1311 1 243 MADS-box Gene Family AT1G26310 61.024 1.08e-103 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci5g1311 K-box 1.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1311 K09264 - gmx:100810129 372.474