Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1306 ATGTGCCCAACGAGAATATGGATTTTTGACGATGAAGCAGCACCAACACAACAGCCAGAAGCCACAGAAATAGATCAAGGAACACTGGATTCTGCCGCTTCTGATTCAGACTCATCCGAAGAATGTCCTACATGTTTTGATAGTTATACAGATGAAAATCCTAAGATAACTGCAGAATGCTCCCATCATTTTCACCTTCCCTGTATACTTGAATGGCAACAAAGAAGTGAAGAATGCCCCAACTGTAGACGGGTGCTGATCATTAATAAAACATTTGATCGATGA 285 0.4105 MCPTRIWIFDDEAAPTQQPEATEIDQGTLDSAASDSDSSEECPTCFDSYTDENPKITAECSHHFHLPCILEWQQRSEECPNCRRVLIINKTFDR 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1306 94 SUPERFAMILY RING/U-box 41 89 - -
Prci5g1306 94 SMART ring_2 42 82 IPR001841 -
Prci5g1306 94 MobiDBLite consensus disorder prediction 19 40 - -
Prci5g1306 94 ProSiteProfiles Zinc finger RING-type profile. 42 83 IPR001841 -
Prci5g1306 94 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 21 89 - -
Prci5g1306 94 MobiDBLite consensus disorder prediction 9 40 - -
Prci5g1306 94 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 87 IPR013083 -
Prci5g1306 94 Pfam RING-H2 zinc finger domain 37 83 IPR024766 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1306 Prci-Chr5 32409985 32451470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1306 34 90 C3H Transcription Factor Family AT5G38895 57.895 2.28e-19 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1306 - - pcin:129312135 194.897