Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1268 ATGTGTGACAAAGAGAGTTTTGAGATAGATGGAAACGAGGATCACATGAGTTATTCATCTAGTATGCCCTCGGATTGGAGATTTGTGGTTCCTAATCTTGCAAACACATCAGTGGGTTTGGTGGATTCATATGTTCCGAGCTTCTGGGATCATCCCATCAGTTCCCAAAACTTAGGGTCATGTGACATCAATGTGCAGAACAATGTTAGCTCCTCATGCACAACTGGAAATAGAAAAGATGGCCTCGCCTTAGCTACTCATGATAGAACACTTGAAATGGGTTGGAACCCAACAAGTTCTATTTTGAAAATGGATGCTTTCTTACCAAACAGACCAACAACAATCTTCCCACAGAGTTTGTCTCAGACTCCCACTGATTCTTCCTTTATTGAGCGAGCTGCAAGATTCTCATGCTTCAGTCAGTTCAATGGAGGAAATTTTGGCAGTATGGTGAACTCATTTGGGATTCCTCATTCGACGGGTCTGTATTCTGGACGGGATGCTCTTGCAGGCCATGGGTTAAAATCAGCACATGGAGCACTATCTCAAGAAAGTTATCTGGATGTTGGTGAAGCTGCAAAAGATGTGTCTCCATCTGTTCAAAATTTGGCTGCTAAAGGAAGTCCACTCAAGAATCACAAGAGAAGTGAAAGCCTAGTAACTTCTCACGATGAAGCAAAACAAGCTATTGGCAGGTCAACTGATGAGTCTGATAGAGCAGAATCAAGTGGTGATGGTGGTAGTGGTGGTCAAAATGATGTGCAGATGTTGGAGGGTACTAGCGGAGAACCTTCTAACAAAGGACTAAACGCAAAAAAAAGGAAAAGAAGTGGGCAGGATTCTGATAATGGAAAAGCCAATGGAGGTTCTGAGCCGCCAAGCGAGGCTGCGATGGACAACCCTGAGGGCCAACAGAAGGGAGACCAGCAACCAACTTCAACGGCCAAGACTTCTGGGAAGGATACCAAACAGGGCTCTCAAGCTTCTGACCCACCAAAGGAGGAATACATACATGTCAGGGCTCGCAGGGGTCAAGCAACGAATAGCCATAGCCTTGCTGAGAGAGTAAGGAGGGAAAAGATCAGTGAAAGGATGAAATTTCTTCAAGACCTTGTACCTGGATGCAGCAAGGTGACAGGCAAGGCGGTTATGCTAGATGAAATCATTAACTATGTACAGTCACTTCAACGACAGGTTGAGTTTTTGTCTATGAAACTTGCAACCGTAAATTCACGGCTGGATTTTAATCTTGAAGGACTTGTTGCTAAAGATATGCTTCAGCAACGGCCTGGCCCCTCATCAGCATTGAGGTTTTCTCCAGAAATGCCAATGGTTTTTCCTCCTTTACATCTGTCTCAACCAGGCCTTCTACCGTCAAATCTTCCTTGCATAGCGAACTCATCTGATATACTTCGAAGAACCATTCATCCACAGCTAACTCCCTTGGTTGGAGGATTCAAGGATCCTAATCAGCTACCTGAGATGTGGGAGGATGAACTGCACAATGTTGTACAGATGAGCCATGCACAAACTGCTCCACCGAGTAGTCAAGAGGAAGATGGTATATTTTCCTCAACAACTAAGCCTTTATGTGATATTTGGTAA 1605 0.4442 MCDKESFEIDGNEDHMSYSSSMPSDWRFVVPNLANTSVGLVDSYVPSFWDHPISSQNLGSCDINVQNNVSSSCTTGNRKDGLALATHDRTLEMGWNPTSSILKMDAFLPNRPTTIFPQSLSQTPTDSSFIERAARFSCFSQFNGGNFGSMVNSFGIPHSTGLYSGRDALAGHGLKSAHGALSQESYLDVGEAAKDVSPSVQNLAAKGSPLKNHKRSESLVTSHDEAKQAIGRSTDESDRAESSGDGGSGGQNDVQMLEGTSGEPSNKGLNAKKRKRSGQDSDNGKANGGSEPPSEAAMDNPEGQQKGDQQPTSTAKTSGKDTKQGSQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNSRLDFNLEGLVAKDMLQQRPGPSSALRFSPEMPMVFPPLHLSQPGLLPSNLPCIANSSDILRRTIHPQLTPLVGGFKDPNQLPEMWEDELHNVVQMSHAQTAPPSSQEEDGIFSSTTKPLCDIW 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1268 534 Gene3D - 342 417 IPR036638 GO:0046983
Prci5g1268 534 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 233 441 IPR024097 GO:0006355
Prci5g1268 534 CDD bHLH_AtBPE_like 335 420 - -
Prci5g1268 534 MobiDBLite consensus disorder prediction 508 524 - -
Prci5g1268 534 Pfam Helix-loop-helix DNA-binding domain 348 396 IPR011598 GO:0046983
Prci5g1268 534 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 343 414 IPR036638 GO:0046983
Prci5g1268 534 MobiDBLite consensus disorder prediction 244 267 - -
Prci5g1268 534 MobiDBLite consensus disorder prediction 303 326 - -
Prci5g1268 534 MobiDBLite consensus disorder prediction 204 333 - -
Prci5g1268 534 MobiDBLite consensus disorder prediction 1 21 - -
Prci5g1268 534 MobiDBLite consensus disorder prediction 508 528 - -
Prci5g1268 534 SMART finulus 351 401 IPR011598 GO:0046983
Prci5g1268 534 MobiDBLite consensus disorder prediction 210 242 - -
Prci5g1268 534 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 345 395 IPR011598 GO:0046983
Prci5g1268 534 FunFam Basic helix-loop-helix transcription factor 342 414 - -
Prci5g1268 534 Coils Coil 392 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1268 Prci-Chr5 31894555 31899276 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1268 40 509 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 46.025 8.55e-109 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci5g1268 HLH 6.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1268 - - gmx:100797720 672.93