Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1250 ATGGAGAAGAAAGGAAAGATGGGTTTGTTTTGTTTAGCTTTGTTCTCCTTATGGAGTTCTGTATCTGGTTTGCTTTCCCCTAAAGGTGTAAACTTTGAAGTGCAAGCTCTAATGGGGATTAAAGCTTCTTTGGTGGATCCTCATGCTGCTCTTTATAACTGGGATGGTGATGCTGTGGATCCTTGTAGCTGGGCTATGGTCACTTGTTCTCCTGATCGTTTTGTCATTGCCCTGGGAATTCCAAGCCAGAACATATCTGGGACTTTATCTCCAAGCATTGGAAACTTGACGAATCTACAGACTGTGCTCCTGCAAGATAACAATATATCAGGACCTATTCCTTCTGAGTTGGGGAGGCTCCAAAAGCTTGAAACTCTTGATCTTTCTGATAATTCTTTTTCAGGTCAACTTCCGGAAAGTTTTTCCCAAATGAAGAGTCTTCATTATCTGAGGCTCAATAACAACAGTCTCACTGGAGAAATTCCATCCTCTTTGGCTAACATGACTCAGCTTGCTTTTCTGGATATCTCTTATAATAACTTGAGCGGACCTGTACCTACTATAAATGCGAAAACATTCAATATTGTAGGCAATCCCCAGATATGTGATACTGGAACTGAGCAAAACTGCTTTAGAATGTCTGTACTTTCTTCTTCCTTGAATAATTCTCAAGATTTACAATCCTCAGGTAGAGCTAAGCACCACAAAGTTGCCTTGGCATTTGCTTCAAGCATGAGCTGCCTCTGCCTACTAATTGTTGGGTTTGGTTTCGTCCTATGGTGGAGACAAAGATATAACAAGCAAATTTTCTTTGATGTTAATGAACAACACTGCGAAGAAATATGCCTTGGAAACCTCAAGAAGTTCCCTTTCAGAGAGCTTCAGGTTGCTACAAATAACTTCAGCAGCAAGAACTTGATTGGCAAAGGTGGATTTGGGAATGTGTACAAAGGGTACCTCCCTGATGGTACAATTATAGCAGTGAAGAGGCTAAAAGATGGCAATGCCATTGGAGGTGAGATCCAATTCCAGACTGAAGTTGAGATGATTAGCTTAGCCGTGCACCGAAACCTCCTTCGCCTCTATGGATTTTGTATGACAGCAACTGAAAGACTCTTGGTTTATCCCTACATGTCCAATGGTAGTGTTGCTTCCCGTCTCAAAGCCTGTCTTGATTGGGGAACAAGAAAGAGGATAGCTTTAGGAGCTGCAAGGGGCTTGTTATATTTGCATGAGCAATGTGACCCCAATCGGGATGTGAAGGCTGCAAATATCTTGCTTGATGATGATTGTGCGGCTGGTGTGGTAGGGGATTTCGGGTTAGCAAAGCTTTGATCACCATGATTCTCATGTGACACGGCTGTGAGGGGCACAGTTGGGCACATAGCCCCAGAATATCTGTCAACAGGCCAGTCCTCTGAGAAAACAGATGTTGGCTTTGGAATCCTTCTTCTTGAATTAATCTCAGGCCAGAGAGCTCTTGAATTTGGAAAAGCAGTAAACCAGAAAGGAGCTATTCTTGACTGGGTGAAGAAGATTCATCAGGAGAAGAAGCTTGACTTGTTAGTTGACAAGGACCTGAAAAGCAACTATGATAAAATTGAACTTGAAGAAATAGTTCAAGTAGCTCTTTTGTGCACTCAGTACCTTCCACGTCATAGACCAAAGATGTCTGTGGTTAGGATGCTTGAAGGAGATGGGCTTGCAGAGAAATGGGAAGCCTCACAGAGAGCAGAATCAACAAGAAGCAGAGGAAATGAACTCTCATCTTCAGAAAGATACTCTGATCTTACTGATGACTCTTCATTGCTTGCACAGGCTATGGAGCTTTCGGGACCAAGGTGA 1845 0.4276 MEKKGKMGLFCLALFSLWSSVSGLLSPKGVNFEVQALMGIKASLVDPHAALYNWDGDAVDPCSWAMVTCSPDRFVIALGIPSQNISGTLSPSIGNLTNLQTVLLQDNNISGPIPSELGRLQKLETLDLSDNSFSGQLPESFSQMKSLHYLRLNNNSLTGEIPSSLANMTQLAFLDISYNNLSGPVPTINAKTFNIVGNPQICDTGTEQNCFRMSVLSSSLNNSQDLQSSGRAKHHKVALAFASSMSCLCLLIVGFGFVLWWRQRYNKQIFFDVNEQHCEEICLGNLKKFPFRELQVATNNFSSKNLIGKGGFGNVYKGYLPDGTIIAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTATERLLVYPYMSNGSVASRLKACLDWGTRKRIALGAARGLLYLHEQCDPKXRDVKAANILLDDDCAAGVVGDFGLAKLXSPXFSCDTAVRGTVGHIAPEYLSTGQSSEKTDVXGFGILLLELISGQRALEFGKAVNQKGAILDWVKKIHQEKKLDLLVDKDLKSNYDKIELEEIVQVALLCTQYLPRHRPKMSEXVRMLEGDGLAEKWEASQRAESTRSRGNELSSSERYSDLTDDSSLLAQAMELSGPR 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1250 617 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 577 - -
Prci5g1250 617 Pfam Protein kinase domain 302 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci5g1250 617 MobiDBLite consensus disorder prediction 584 608 - -
Prci5g1250 617 Pfam Leucine rich repeat 122 181 IPR001611 GO:0005515
Prci5g1250 617 SUPERFAMILY L domain-like 33 195 - -
Prci5g1250 617 Gene3D Phosphorylase Kinase; domain 1 270 377 - -
Prci5g1250 617 FunFam Somatic embryogenesis receptor kinase 1 270 377 - -
Prci5g1250 617 Gene3D Ribonuclease Inhibitor 30 212 IPR032675 -
Prci5g1250 617 MobiDBLite consensus disorder prediction 576 617 - -
Prci5g1250 617 SUPERFAMILY Protein kinase-like (PK-like) 286 569 IPR011009 -
Prci5g1250 617 ProSiteProfiles Protein kinase domain profile. 301 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci5g1250 617 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Prci5g1250 617 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Prci5g1250 617 SMART serkin_6 301 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci5g1250 617 FunFam Putative LRR receptor-like serine/threonine-protein kinase 30 212 - -
Prci5g1250 617 Gene3D Transferase(Phosphotransferase) domain 1 378 586 - -
Prci5g1250 617 FunFam Somatic embryogenesis receptor-like kinase 1 378 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1250 Prci-Chr5 31659923 31663735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1250 7 617 Receptor kinase-like Gene Family AT5G16000 72.000 0.0 884
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Prci5g1250 Pkinase 1.5e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1250 - - gmx:100790194 1033.86