Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci5g1204 | ATGAAGATATTCGTGAAGACTCTCAAAGGCACCAGCTTCGAAATCGAAGTCAAGCCTGAAGACAAGGTTTCTGAAGTGAAGAAACATATAGAAACTGTTCAGGGTGCAGCTGTCTATCCAGCTGCGCAACAAATGCTTATTCATCAAGGGAAAGTTCTCAAAGATGGTACTACCCTGGAGGAAAATAAAGTGGTTGAAAACAGTTTTGTTGTGATTATGCTGTCGAAGAGTAAGAGCTCATCTGGCGAGGGATCTGCTAGTGCACCTTCAGTTAAGGCTCCTCAGACTAGTTCAGCTCCTACTCCTGCCCCTGTGTCAATGGCCCCTCAAGCTCCTGCTGCAGCTACTTTGTCACCACCTCCTGCACCTGCGCCTGCTCCTGCACCTTCACCTTCACCTTCACCTTCACCTTCACCAGCTCCAGCTCCAGCTCCTGCTGTGTCAGGGTCTGCTGATATCTATGGGCTGGCAGCATCTAATCTTGTTGCTGGGAACAACTTGGAGGGAACAATTCAGCAGATTCTTGATATGGGTGGTGGGAGCTGGGATAGGGATACTGTTGTCCGAGCCCTTCGCGCTGCTTACAACAACCCTGAGAGAGCTGTTGAATACTTGTATACAGGTATCCCAGAGCAAGCTGAAGCCCCCCCTGTGGCTCGTGTGCCTGCCAGTGCTGCACAAGCTGGAAATGCTCCATCTGCAGCTCCACAAGCAGCACAACCTGCACCTGTTCCTCCAAGTGGACCTAATGCTAATCCTTTAGATCTCTTTCCCCAGGGCCTCCCAAATGTTGGTGCTGGTGCAGCTGGTGCTGGCAATCTAGATTTTCTGCGCAACAGTCAACAGTTCCAAGCATTGCGAGGCATGGTGCAGGCTAATCCGCAAATATTGCAGCCTATGCTTCAAGAGCTTGGGAAACAAAATCCTCATCTAATGAGATTGATTCAAGAGCATCAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCGGAAGGTGGTGAGGGGAATATATTAGGGCAGCTGGCTAATGCCATGCCGCAAACAGTAGCTGTCACCCCTGAGGAGCGCCAAGCCATTGAACGTCTCGAAGCAATGGGATTTGATCGAGCACTTGTTTTGGAGGTGTACTTTGCTTGTAACAAAAATGAAGAATTGGCTGCTAATTACCTCTTAGATCATATGCATGAGTTTGAGGAATGA | 1200 | 0.4908 | MKIFVKTLKGTSFEIEVKPEDKVSEVKKHIETVQGAAVYPAAQQMLIHQGKVLKDGTTLEENKVVENSFVVIMLSKSKSSSGEGSASAPSVKAPQTSSAPTPAPVSMAPQAPAAATLSPPPAPAPAPAPSPSPSPSPSPAPAPAPAVSGSADIYGLAASNLVAGNNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPPVARVPASAAQAGNAPSAAPQAAQPAPVPPSGPNANPLDLFPQGLPNVGAGAAGAGNLDFLRNSQQFQALRGMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPAEGGEGNILGQLANAMPQTVAVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFEE | 399 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci5g1204 | 399 | SMART | uba_6 | 167 | 207 | IPR015940 | - | |
| Prci5g1204 | 399 | SMART | uba_6 | 355 | 392 | IPR015940 | - | |
| Prci5g1204 | 399 | MobiDBLite | consensus disorder prediction | 79 | 146 | - | - | |
| Prci5g1204 | 399 | SUPERFAMILY | UBA-like | 336 | 397 | IPR009060 | GO:0005515 | |
| Prci5g1204 | 399 | SMART | CBM | 272 | 315 | IPR006636 | - | |
| Prci5g1204 | 399 | MobiDBLite | consensus disorder prediction | 222 | 251 | - | - | |
| Prci5g1204 | 399 | SUPERFAMILY | Ubiquitin-like | 1 | 79 | IPR029071 | - | |
| Prci5g1204 | 399 | Gene3D | - | 265 | 330 | IPR036353 | GO:0003684|GO:0006289|GO:0043161 | |
| Prci5g1204 | 399 | PANTHER | UV EXCISION REPAIR PROTEIN RAD23 | 1 | 388 | - | - | |
| Prci5g1204 | 399 | NCBIfam | UV excision repair protein Rad23 | 1 | 398 | IPR004806 | GO:0006289 | |
| Prci5g1204 | 399 | Gene3D | - | 1 | 80 | - | - | |
| Prci5g1204 | 399 | MobiDBLite | consensus disorder prediction | 114 | 144 | - | - | |
| Prci5g1204 | 399 | PRINTS | DNA repair protein Rad23 signature | 300 | 322 | IPR004806 | GO:0006289 | |
| Prci5g1204 | 399 | PRINTS | DNA repair protein Rad23 signature | 349 | 365 | IPR004806 | GO:0006289 | |
| Prci5g1204 | 399 | PRINTS | DNA repair protein Rad23 signature | 381 | 396 | IPR004806 | GO:0006289 | |
| Prci5g1204 | 399 | PRINTS | DNA repair protein Rad23 signature | 366 | 380 | IPR004806 | GO:0006289 | |
| Prci5g1204 | 399 | Pfam | Ubiquitin family | 3 | 76 | IPR000626 | GO:0005515 | |
| Prci5g1204 | 399 | CDD | UBA1_Rad23_plant | 161 | 210 | - | - | |
| Prci5g1204 | 399 | Pfam | XPC-binding domain | 274 | 330 | IPR015360 | GO:0003684|GO:0006289|GO:0043161 | |
| Prci5g1204 | 399 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 165 | 208 | IPR015940 | - | |
| Prci5g1204 | 399 | CDD | Ubl_Rad23 | 1 | 74 | - | - | |
| Prci5g1204 | 399 | Gene3D | - | 347 | 394 | - | - | |
| Prci5g1204 | 399 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 352 | 393 | IPR015940 | - | |
| Prci5g1204 | 399 | MobiDBLite | consensus disorder prediction | 79 | 104 | - | - | |
| Prci5g1204 | 399 | Pfam | UBA/TS-N domain | 355 | 390 | IPR015940 | - | |
| Prci5g1204 | 399 | Pfam | UBA/TS-N domain | 170 | 205 | IPR015940 | - | |
| Prci5g1204 | 399 | SUPERFAMILY | UBA-like | 164 | 216 | IPR009060 | GO:0005515 | |
| Prci5g1204 | 399 | Gene3D | - | 160 | 210 | - | - | |
| Prci5g1204 | 399 | SMART | ubq_7 | 1 | 75 | IPR000626 | GO:0005515 | |
| Prci5g1204 | 399 | FunFam | UV excision repair protein RAD23 homolog | 346 | 394 | - | - | |
| Prci5g1204 | 399 | FunFam | UV excision repair protein RAD23 B | 265 | 330 | - | - | |
| Prci5g1204 | 399 | FunFam | UV excision repair protein RAD23 | 1 | 80 | - | - | |
| Prci5g1204 | 399 | FunFam | UV excision repair protein RAD23 homolog | 160 | 210 | - | - | |
| Prci5g1204 | 399 | SUPERFAMILY | XPC-binding domain | 270 | 336 | IPR036353 | GO:0003684|GO:0006289|GO:0043161 | |
| Prci5g1204 | 399 | ProSiteProfiles | Ubiquitin domain profile. | 1 | 79 | IPR000626 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci5g1204 | Prci-Chr5 | 31071450 | 31078188 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci5g1204 | 1 | 74 | Cytoplasmic Ribosomal Protein Gene Family | AT3G52590 | 39.189 | 7.14e-09 | 52.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci5g1204 | K10839 | - | gmx:100809066 | 513.457 |