Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1203 ATGAAGATATTCGTGAAGACTCTCAAAGGCACCAGCTTCGAAATCGAAGTCAAGCCTGAAGACAAGGTTTCTGAAGTGAAGAAACATATAGAAACTGTTCAGGGTGCAGCTGTCTATCCAGCTGCGCAACAAATGCTTATTCATCAAGGGAAAGTTCTCAAAGATGGTACTACCCTGGAGGAAAATAAAGTGGTTGAAAACAGTTTTGTTGTGATTATGCTGTCGAAGGCTCCTCAGACTAGTTCAGCTCCTACTCCTGCCCCTGTGTCAATGGCCCCTCAAGCTCCTGCTGCAGCTACTTTGTCACCACCTCCTGCACCTGCGCCTGCTCCTGCACCTTCACCTTCACCTTCACCTTCACCTTCACCAGCTCCAGCTCCAGCTCCTGCTGTGTCAGGGTCTGCTGATATCTATGGGCTGGCAGCATCTAATCTTGTTGCTGGGAACAACTTGGAGGGAACAATTCAGCAGATTCTTGATATGGGTGGTGGGAGCTGGGATAGGGATACTGTTGTCCGAGCCCTTCGCGCTGCTTACAACAACCCTGAGAGAGCTGTTGAATACTTGTATACAGGTATCCCAGAGCAAGCTGAAGCCCCCCCTGTGGCTCGTGTGCCTGCCAGTGCTGCACAAGCTGGAAATGCTCCATCTGCAGCTCCACAAGCAGCACAACCTGCACCTGTTCCTCCAAGTGGACCTAATGCTAATCCTTTAGATCTCTTTCCCCAGGGCCTCCCAAATGTTGGTGCTGGTGCAGCTGGTGCTGGCAATCTAGATTTTCTGCGCAACAGTCAACAGTTCCAAGCATTGCGAGGCATGGTGCAGGCTAATCCGCAAATATTGCAGCCTATGCTTCAAGAGCTTGGGAAACAAAATCCTCATCTAATGAGATTGATTCAAGAGCATCAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCGGAAGGTGGTGAGGGGAATATATTAGGGCAGCTGGCTAATGCCATGCCGCAAACAGTAGCTGTCACCCCTGAGGAGCGCCAAGCCATTGAACGTCTCGAAGCAATGGGATTTGATCGAGCACTTGTTTTGGAGGTGTACTTTGCTTGTAACAAAAATGAAGAATTGGCTGCTAATTACCTCTTAGATCATATGCATGAGTTTGAGGAATGA 1152 0.4905 MKIFVKTLKGTSFEIEVKPEDKVSEVKKHIETVQGAAVYPAAQQMLIHQGKVLKDGTTLEENKVVENSFVVIMLSKAPQTSSAPTPAPVSMAPQAPAAATLSPPPAPAPAPAPSPSPSPSPSPAPAPAPAVSGSADIYGLAASNLVAGNNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPPVARVPASAAQAGNAPSAAPQAAQPAPVPPSGPNANPLDLFPQGLPNVGAGAAGAGNLDFLRNSQQFQALRGMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPAEGGEGNILGQLANAMPQTVAVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFEE 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1203 383 Pfam UBA/TS-N domain 154 189 IPR015940 -
Prci5g1203 383 Pfam UBA/TS-N domain 339 374 IPR015940 -
Prci5g1203 383 NCBIfam UV excision repair protein Rad23 1 382 IPR004806 GO:0006289
Prci5g1203 383 SUPERFAMILY UBA-like 148 200 IPR009060 GO:0005515
Prci5g1203 383 PRINTS DNA repair protein Rad23 signature 350 364 IPR004806 GO:0006289
Prci5g1203 383 PRINTS DNA repair protein Rad23 signature 365 380 IPR004806 GO:0006289
Prci5g1203 383 PRINTS DNA repair protein Rad23 signature 333 349 IPR004806 GO:0006289
Prci5g1203 383 PRINTS DNA repair protein Rad23 signature 284 306 IPR004806 GO:0006289
Prci5g1203 383 Gene3D - 331 378 - -
Prci5g1203 383 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Prci5g1203 383 FunFam UV excision repair protein RAD23 1 80 - -
Prci5g1203 383 Gene3D - 1 77 - -
Prci5g1203 383 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Prci5g1203 383 SUPERFAMILY Ubiquitin-like 1 86 IPR029071 -
Prci5g1203 383 CDD UBA1_Rad23_plant 145 194 - -
Prci5g1203 383 MobiDBLite consensus disorder prediction 79 130 - -
Prci5g1203 383 CDD Ubl_Rad23 1 74 - -
Prci5g1203 383 MobiDBLite consensus disorder prediction 205 235 - -
Prci5g1203 383 MobiDBLite consensus disorder prediction 98 128 - -
Prci5g1203 383 FunFam UV excision repair protein RAD23 B 249 314 - -
Prci5g1203 383 SUPERFAMILY XPC-binding domain 254 320 IPR036353 GO:0003684|GO:0006289|GO:0043161
Prci5g1203 383 FunFam UV excision repair protein RAD23 homolog 330 378 - -
Prci5g1203 383 SUPERFAMILY UBA-like 320 381 IPR009060 GO:0005515
Prci5g1203 383 SMART ubq_7 1 75 IPR000626 GO:0005515
Prci5g1203 383 FunFam UV excision repair protein RAD23 homolog 144 194 - -
Prci5g1203 383 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 149 192 IPR015940 -
Prci5g1203 383 Pfam XPC-binding domain 258 314 IPR015360 GO:0003684|GO:0006289|GO:0043161
Prci5g1203 383 SMART uba_6 151 191 IPR015940 -
Prci5g1203 383 SMART uba_6 339 376 IPR015940 -
Prci5g1203 383 Gene3D - 249 314 IPR036353 GO:0003684|GO:0006289|GO:0043161
Prci5g1203 383 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 336 377 IPR015940 -
Prci5g1203 383 Gene3D - 144 194 - -
Prci5g1203 383 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 372 - -
Prci5g1203 383 SMART CBM 256 299 IPR006636 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1203 Prci-Chr5 31071445 31078188 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1203 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.189 9.60e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1203 K10839 - gmx:100809066 501.901