Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1199 ATGCTGGTTCGGATGAGGGTGATGACTTGGGGTAGGGTTGGCAAGTCTCTTCAAGCTCTTCTTGCTCATGGTTTACTCTTCTCATTCACTCTCCTGCTTGTTCTCAAGATTGACCGTGTCGTTCCTTACTCATGGTGGATTATATTTTCACCTCTTTGGCTTTTTCATGGTGTTGTAGCGCGAGGTCGGTTTTCCCTGCCTGCTCCTTCAATGCCTCATGATCGCCATTGGGCTCCTTGTCATGCCATCATGGGAACTCCATTACTTGTTGCTTTTGAGATACTTCTTTGTATACATCTTGAGAGCTCTTATGCGATCAATTTAAAGATAGTTTTTTTACCGCTGCTGGCTTTTGAAGTGGCAATTTTGATTGATAACATTAGGATGTGTAGGATTTTGCTGCCAGTAGATGATGAAAATATGAGTGATGAAGCAATATTCGAAACCCTTCCTCACTTCTGGATTATGGCATCAATGGTCTTCTTTATTGCTGCTACAGTGTTTACTCTTCTTAAGATATCTGGTGAAGTAGCTACTCTAGGCTGGTGGGACTTATATATTAACTTTGGCATTGGAGAGTGCTTTGCCTTTCTTTCTTCTGCAAAGTGGTACAATCCAAGAATTCATGGTGACATTACTGAGTCATCATCATTATTTGTGCGATACCAAGACCGGGGTAGCAGCTTAGACTGGCAGCAAAGTGGGTTATGCAATCTGCAGAACATTGGTGGGCACATTATGAAGATTCTTTTCATTGGTTTCCAAATACTGCTAATTTTGCATTTAGAGGGAAGTCCCGCCACTGCCAGAAATATGCCGTTACAGACTGTTTTTTCTCCTCTTTTTCTGTTGCAAGGAGCTGCTGTTTTATTTGCAGCTTACAGATTGGCGGAAAAACTAGTACTTTTACTTTACGATGGAGAAATTTCTGCAAGATACTCAGCTGTTGCATCAAAAGCACACGATTGCTTTGGTTTCTTGGATCATGGGTCAAGGTTGCTGGGTTGGTGGTCGATAGATGAAACAAGTAGAGAGGAACAAGCTAGAATATACTATGATGGGAATTCAAAGTATAATACTTTCTCCCCTGATATGGTGAAGAAAATGCCTAGAGCAGTTCTTGCTGAGGAGATTTGTAGACTGCAGGCTGCATTGACTGAGCAGACTGATGTTACAAAATTTAGCCAGCAGCAGTATGAAAGACTACAAAATGAAAAGATCCTATGCAGAGTTTGCTTTGAAGAGCAGATAAATGTGGTTCTGCTTCCTTGCAGGCATCATATTATTTGCAGTGCTTGCTGTGAAAAATGTAAGAGGTGTCCTGTCTGCCGTGTCTGCATCGAAAAAGCAATGCCTGTATATGATTTGTAG 1371 0.4158 MLVRMRVMTWGRVGKSLQALLAHGLLFSFTLLLVLKIDRVVPYSWWIIFSPLWLFHGVVARGRFSLPAPSMPHDRHWAPCHAIMGTPLLVAFEILLCIHLESSYAINLKIVFLPLLAFEVAILIDNIRMCRILLPVDDENMSDEAIFETLPHFWIMASMVFFIAATVFTLLKISGEVATLGWWDLYINFGIGECFAFLSSAKWYNPRIHGDITESSSLFVRYQDRGSSLDWQQSGLCNLQNIGGHIMKILFIGFQILLILHLEGSPATARNMPLQTVFSPLFLLQGAAVLFAAYRLAEKLVLLLYDGEISARYSAVASKAHDCFGFLDHGSRLLGWWSIDETSREEQARIYYDGNSKYNTFSPDMVKKMPRAVLAEEICRLQAALTEQTDVTKFSQQQYERLQNEKILCRVCFEEQINVVLLPCRHHIICSACCEKCKRCPVCRVCIEKAMPVYDL 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1199 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 384 454 IPR013083 -
Prci5g1199 456 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 8 455 - -
Prci5g1199 456 ProSiteProfiles Zinc finger RING-type profile. 409 444 IPR001841 -
Prci5g1199 456 Pfam Zinc finger, C3HC4 type (RING finger) 407 449 - -
Prci5g1199 456 Pfam Transmembrane Fragile-X-F protein 35 284 IPR019396 -
Prci5g1199 456 SUPERFAMILY RING/U-box 399 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1199 Prci-Chr5 30983342 30989089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1199 8 456 C3H Transcription Factor Family AT1G73950 61.050 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1199 - - qsu:112036474 674.085