Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1196 ATGGCTGGAACATCGTGGTTGGTGGACAAAAGTAGAATAGCAACAAAAATAAAGAGTGCTTCTGGAGCATGTGATCCTGAGAAGGTTATATGGAAAAGCAATCCCACCAGAGCTTGCCCAAGTTGTCAGCACATTATTGATAACAGCGATGTAGCACAAGAATGGCCTGGATTGCCAAAGGGCGTGAAATTTGATCCATCCGATCAAGATATAATATGCCACTTGCTTGCAAAAGTTGGTGTGGGAAATTCAAGATCGCATCCTTTCATTGATGAATTTATCACTACTCTTGAAGTGGATGATGGAATTTGTTATACTCATCCAAAACATTTACCCGGTGTTAATCAAGATGGAAGTGCATCCCACTTCTTCCATAGAGCAATCAAGGCTTACAATACTGGCAATCGAAAGCGTAGAAAAATACTTGGTCAGGATTTCAGTGATGTCCGCTGGCACAAGACTGGAAGAACTAAACCGGTCATGTTGAACGGGCTTCAAAAGGGATGTAAAAAGATTCTGGTTCTTTATATGAGTAAAGGAGGTAAAGCAGAGAAAACTAATTGGGTTATGCATCAATACCATCTCGGAACACAAGAGGATGAGAAGGAAGGGGAGTATGTTGTCTCTAAAATTTTTTACCAGCAGCAGCACGTCAAATCTGGCGATAAAGATGACCTGGATATTCCTGCAAGCACCCTGGATATTCCTGAAAGCACTGAAAACATTGAATCAACAGCTGCGCAAGTCCATCCAGTCACCCCCAAATCAGTGACCCCTGATCCACCTTGTAACAAAAGACCACATTCAAACGTTGATGTGGGGCTAGAATCGCATTTCATTCCTCAGCATCCTTCGACGGATTGTGTAGAAGATGTATCTCAAGCAGGTGAAGAGCCAAAAACTGATATCCCCAAGGAAGAAGCACAAATTTGTGATGAAGGAATAGATAATGATGAAGACGATGATGCAAATGAAGAACAAAAATGGTGGGAAAGTGAGTCACAGCATTTGTTGAATTCACAACAACTCGTCGAAGCATTGTCCTTGTGTGAGGACCTCCTTCACAGCCAATCTCCCAACAGAGATGACAAAAGTGAAGAACACAAGGACCGACCCAGTCTTTCTGTGTATGCGCAACTAGGACCAGAGCATCTGAAAAAGGATCTTGAAGAGTGCCAAAATCTTGCTATCGATCCCGCAAATATAGAACTTGATACGCCTCCTGAGTTTCGACTCAGTCAGCTGGAGTTTGGTTCACAAGATAGCTACATTGCCTGGGGTGGCAGCAAGGAAGAGAACTGA 1302 0.4301 MAGTSWLVDKSRIATKIKSASGACDPEKVIWKSNPTRACPSCQHIIDNSDVAQEWPGLPKGVKFDPSDQDIICHLLAKVGVGNSRSHPFIDEFITTLEVDDGICYTHPKHLPGVNQDGSASHFFHRAIKAYNTGNRKRRKILGQDFSDVRWHKTGRTKPVMLNGLQKGCKKILVLYMSKGGKAEKTNWVMHQYHLGTQEDEKEGEYVVSKIFYQQQHVKSGDKDDLDIPASTLDIPESTENIESTAAQVHPVTPKSVTPDPPCNKRPHSNVDVGLESHFIPQHPSTDCVEDVSQAGEEPKTDIPKEEAQICDEGIDNDEDDDANEEQKWWESESQHLLNSQQLVEALSLCEDLLHSQSPNRDDKSEEHKDRPSLSVYAQLGPEHLKKDLEECQNLAIDPANIELDTPPEFRLSQLEFGSQDSYIAWGGSKEEN 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1196 433 MobiDBLite consensus disorder prediction 356 373 - -
Prci5g1196 433 Pfam No apical meristem (NAM) protein 59 195 IPR003441 GO:0003677|GO:0006355
Prci5g1196 433 ProSiteProfiles NAC domain profile. 58 214 IPR003441 GO:0003677|GO:0006355
Prci5g1196 433 FunFam NAC domain-containing protein 8 67 218 - -
Prci5g1196 433 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 4 393 IPR044799 GO:0003700
Prci5g1196 433 MobiDBLite consensus disorder prediction 249 307 - -
Prci5g1196 433 MobiDBLite consensus disorder prediction 356 376 - -
Prci5g1196 433 SUPERFAMILY NAC domain 43 214 IPR036093 GO:0003677|GO:0006355
Prci5g1196 433 MobiDBLite consensus disorder prediction 293 307 - -
Prci5g1196 433 Gene3D NAC domain 67 219 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1196 Prci-Chr5 30932883 30937005 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1196 36 216 NAC Transcription Factor Family AT5G56620 57.436 3.09e-70 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci5g1196 NAM 2.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1196 - - gmx:100803236 648.662