Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1188 ATGGATGCGAGTAGCTGCGTGGATGAAAGCACTACGAGTGATTCGGTGTCCATATCGCTTTCTCCGGCGAATACTACTGTTTCCCTGCTCGACGTGACGCCTCAAAAGTCATCGCCGCCGCTGCCAACCAACAGTCTCTGCCGGGTCGGCAGCGGTGCCAGCACTGTTGTGGATTCCGATAGCGGCGGTGAAGCTGAGTCCCGGAAACTGCCGTCGTCCAGGTACAAGGGTGTGGTGCCGCAGCCCAATGGACGATGGGGGGCCCAGATATACGAGAAGCATCAGCGCGTTTGGCTGGGCACGTTCAATGAGGAAGATGAGGCTGCGAGAGCCTACGACATCGCCGCCCAGAGGTTCCGCGGCAAGGACGCCGTCACCAACTTTAAGCCCCTCAACGGGAACAGCTCCGACGACGATATTGAGACCGCGTTCCTTAGCTCGCATTCCAAAGCCGAGATCGTGGACATGCTGAGGAAGCACACCTACAATGACGAACTCCAGCAGAGCAAGCGCAACCGCAGATTGGCCGGTGGAAGCTTAGGGAAGTTGCGAAAGGACGACGGCGGAGGGTTGTGCTTCGAGCGGACTCAGAAAGCGCGGGAGCAGCTGTTCGAGAAAACCGTCACGCCGAGCGACGTGGGAAAGCTGAATCGGTTGGTGATACCCAAGCAGCACGCGGAGAAGCACTTCCCGTTGCAGAACGGAGGCGCTTCTTGCCCGGCGGCCAAGGGGGTGCTTCTGAACTTCGAGGACGATGGAGGGAAAGTGTGGAGGTTTCGGTACTCGTATTGGAACAGTAGCCAGAGCTACGTGCTGACGAAAGGTTGGAGCCGGTTCGTGAAGGAGAAGAACCTGAAAGCCGGCGACGCGGTCAGTTTCCACAGGTCAACCGGACCGGAACGCCAGCTCTACATTGACTGGAAAGGCCGGAATAACCAGAGAGTAGGTGGTGAAGGGACCGGAATGGAGGGGTTGTACAACTCAGTTGGACCGGTGGTGGAGCCGGTTCAGATAGTTCGGCTGTTTGGGGTGAACATTCTGAAAATGCCGGCGTCGGATTCTGTTGGTGGGAGCTGCCACGGCAAGAGGAAAGAGATGGAGCTGTTAACGTTAGAGTTTAGCAAGAACCGAAATAATTGGAGCTTTGTAACGTTTGTTTTCATTTTTATTTTTGGTGTAATTTTCTGA 1188 0.5598 MDASSCVDESTTSDSVSISLSPANTTVSLLDVTPQKSSPPLPTNSLCRVGSGASTVVDSDSGGEAESRKLPSSRYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKPLNGNSSDDDIETAFLSSHSKAEIVDMLRKHTYNDELQQSKRNRRLAGGSLGKLRKDDGGGLCFERTQKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLQNGGASCPAAKGVLLNFEDDGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDAVSFHRSTGPERQLYIDWKGRNNQRVGGEGTGMEGLYNSVGPVVEPVQIVRLFGVNILKMPASDSVGGSCHGKRKEMELLTLEFSKNRNNWSFVTFVFIFIFGVIF 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1188 395 SMART B3_2 204 311 IPR003340 GO:0003677
Prci5g1188 395 MobiDBLite consensus disorder prediction 31 78 - -
Prci5g1188 395 MobiDBLite consensus disorder prediction 1 20 - -
Prci5g1188 395 CDD AP2 73 128 IPR001471 GO:0003700|GO:0006355
Prci5g1188 395 MobiDBLite consensus disorder prediction 31 61 - -
Prci5g1188 395 SUPERFAMILY DNA-binding pseudobarrel domain 202 309 IPR015300 -
Prci5g1188 395 ProSiteProfiles AP2/ERF domain profile. 74 129 IPR001471 GO:0003700|GO:0006355
Prci5g1188 395 Gene3D AP2/ERF domain 73 130 IPR036955 GO:0003700|GO:0006355
Prci5g1188 395 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 69 356 IPR044800 GO:0003700
Prci5g1188 395 SMART rav1_2 74 135 IPR001471 GO:0003700|GO:0006355
Prci5g1188 395 Pfam B3 DNA binding domain 204 307 IPR003340 GO:0003677
Prci5g1188 395 Pfam AP2 domain 73 121 IPR001471 GO:0003700|GO:0006355
Prci5g1188 395 CDD B3_DNA 203 296 IPR003340 GO:0003677
Prci5g1188 395 ProSiteProfiles B3 DNA-binding domain profile. 204 311 IPR003340 GO:0003677
Prci5g1188 395 Gene3D - 193 321 IPR015300 -
Prci5g1188 395 FunFam AP2 domain-containing protein RAP2.8 73 130 - -
Prci5g1188 395 SUPERFAMILY DNA-binding domain 73 129 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1188 Prci-Chr5 30873288 30874830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1188 5 377 B3 DNA Binding Superfamily AT1G25560 59.481 6.85e-138 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Prci5g1188 B3 2.3e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1188 K09287 - gmx:100801107 495.352