Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1183 ATGCAGCCCCACTTCATGATAGGGTCCTCCGATTACGTTAAAGCATTAGAATCTGAACGTCTTAAAATCCTTGTCTTCTCCAAAGAGCTTCCTCTCTCCTTGGACCTCGTTACCCGAGCCATTGAAGCGTTGAACTCAGAGCATAATTTGAAGGGCCAATCGGAGTGTTCGGGACAGACATCATCGCAAGGGCCTGTTCTGGAGGAGTTCATACCCATCAAGAGAAGGGAAGACGATGAAGATGAGCAACACTCTCATCATCATCATCCCACGATTAACAACTCCGATGAGACGAAATTGGATTGGCTTAGATCCGTACAACTCTGGAATATTCCTCAATCCCCAGTTCAAGAGGATGTTCCGAGGAAGACGTCGGTGTTGGAAGTAAACAGAGATGGAGGTGCTTTCCAGCCATTTCACAGAGAAGCGAGTGTTCCAAATGCATTAACAGGCAAAGCATCCTCTTCTCCTCCTTCTCCTCCGCCGCCGCCACCACGTCCAGTCGCCGGAAGCAACAAGAAAGAAGGACAGAGTCGAAGGAAGCAACGACGATACTGGTCTCAGGAGCTGCATAAGCGCTTCGTGGACGCACTTCAACAACTCGGTGGAGCAGATTTTGCAACGCCGAAGCAGATTAGGGGACTCATGAAGGTCGATGGCCTCACAAACGATGAAGTGAAGAGTCATTTACAGAAATTTCGATTGCATACGAGGAGACCAAGCCACTTGATACAGAACAACAATGGCGACTCTCAAACGGCTCAATTTGTGTTGGTGAGGAACATTATAGTTCAACCGCCGGAACATGCGCCGCCGCTTGTGATTTATGCGCCGGTGGAGTCACATGCACCGGCGGTGGTTCCGACGAATGTTCAGAGGCAAGTACTGGATTTGGATCATTGTTGTGAACGTTCAAATTCAGAAGAAAGAGGTAATCACAGCGAAGTGGCGGATCATCCAAATTCACCAGATTCATCTTCGTCGACTTTTCATACAATCACAGATTCGCCTCGCTGTTAA 1020 0.4843 MQPHFMIGSSDYVKALESERLKILVFSKELPLSLDLVTRAIEALNSEHNLKGQSECSGQTSSQGPVLEEFIPIKRREDDEDEQHSHHHHPTINNSDETKLDWLRSVQLWNIPQSPVQEDVPRKTSVLEVNRDGGAFQPFHREASVPNALTGKASSSPPSPPPPPPRPVAGSNKKEGQSRRKQRRYWSQELHKRFVDALQQLGGADFATPKQIRGLMKVDGLTNDEVKSHLQKFRLHTRRPSHLIQNNNGDSQTAQFVLVRNIIVQPPEHAPPLVIYAPVESHAPAVVPTNVQRQVLDLDHCCERSNSEERGNHSEVADHPNSPDSSSSTFHTITDSPRC 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1183 339 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 10 323 IPR044787 GO:0003700|GO:0006355
Prci5g1183 339 MobiDBLite consensus disorder prediction 148 184 - -
Prci5g1183 339 Gene3D - 180 238 - -
Prci5g1183 339 SUPERFAMILY Homeodomain-like 179 239 IPR009057 -
Prci5g1183 339 MobiDBLite consensus disorder prediction 155 169 - -
Prci5g1183 339 NCBIfam myb-like DNA-binding domain, SHAQKYF class 181 236 IPR006447 GO:0003677
Prci5g1183 339 MobiDBLite consensus disorder prediction 305 339 - -
Prci5g1183 339 MobiDBLite consensus disorder prediction 318 339 - -
Prci5g1183 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 178 238 IPR017930 -
Prci5g1183 339 FunFam Two-component response regulator 177 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1183 Prci-Chr5 30844898 30846541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1183 11 279 G2-like Transcription Factor Family AT1G68670 44.728 8.61e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Prci5g1183 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1183 - - pcin:129310266 571.237