Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1164 ATGAAGATATTCGTGAAGACTCTCAAAGGCACCAGCTTCGAAATCGAAGTCAAGCCTGAAGACAAGGTTTCTGAAGTGAAGAAACATATAGAAACTGTTCAGGGTGCAGCTGTCTATCCTGCTGCGCAACAAATGCTTATTCATCAAGGGAAAGTTCTCAAAGATGGTACTACCCTGGAGGAAAATAAAGTGGTTGAAAACAGTTTTGTTGTGATTATGCTGTCGAAGGCTCCTCAGACTAGTTCAGCTCCTACTCCTGCCCCTGTGTCAATGGCCCCTCAAGCTCCTGCTGCAGCTACTTTGTCACCACCACCTCCTGCGCCTGCTCCTGCACCTTCACCTTCACCTTCACCTTCACCAGCTCCAGCTCCAGCTCCAGCTCCTGCTGTGTCAGGGTCTGCTGATATCTATGGACTGGCAGCATCTAATCTTGTTGCTGGGAACAACTTGGAGGGAACAATTCAGCAGATTCTTGATATGGGTGGTGGGAGCTGGGATAGGGATACTGTTGTCCGAGCCCTTCGCGCTGCTTACAACAACCCTGAGAGAGCTGTTGAATACTTGTATACAGGTATCCCAGAGCAAGCTGAAGCCCCCCCTGTGGCTCGTGTGCCTGCCAGTGCTGCACAAGCTGGAAATGCTCCATCTGCAGCTCCACAAGCAGCACAACCTGCACCTGTTCCTCCAAGTGGACCTAATGCTAATCCTTTAGATCTCTTTCCCCAGGGCCTTCCAAATGTTGGTGCTGGTGCAGCTGGTGCTGGCAATCTAGATTTTCTGCGCAACAGTCAACAGTTCCAAGCATTGCGAGGCATGGTGCAGGCTAATCCGCAAATATTGCAGCCTATGCTTCAAGAGCTTGGGAAACAAAATCCTCATCTAATGAGATTGATTCAAGAGCATCAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCGGAAGGTGGTGAGGGGAATATATTAGGGCAGCTGGCTAATGCCATGCCGCAAACAGTAGCTGTCACCCCTGAGGAGCGCCAAGCTATTGAACGTCTCGAAGCAATGGGATTTGATCGAGCACTTGTTTTGGAGGTGTACTTTGCTTGTAACAAAAATGAAGAATTGGCTGCTAATTACCTCTTAGATCATATGCATGAGTTTGAGGAATGA 1149 0.4883 MKIFVKTLKGTSFEIEVKPEDKVSEVKKHIETVQGAAVYPAAQQMLIHQGKVLKDGTTLEENKVVENSFVVIMLSKAPQTSSAPTPAPVSMAPQAPAAATLSPPPPAPAPAPSPSPSPSPAPAPAPAPAVSGSADIYGLAASNLVAGNNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPPVARVPASAAQAGNAPSAAPQAAQPAPVPPSGPNANPLDLFPQGLPNVGAGAAGAGNLDFLRNSQQFQALRGMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPAEGGEGNILGQLANAMPQTVAVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFEE 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1164 382 FunFam UV excision repair protein RAD23 homolog 143 193 - -
Prci5g1164 382 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Prci5g1164 382 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 371 - -
Prci5g1164 382 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Prci5g1164 382 MobiDBLite consensus disorder prediction 203 233 - -
Prci5g1164 382 FunFam UV excision repair protein RAD23 homolog 329 377 - -
Prci5g1164 382 FunFam UV excision repair protein RAD23 1 80 - -
Prci5g1164 382 SUPERFAMILY UBA-like 147 199 IPR009060 GO:0005515
Prci5g1164 382 SUPERFAMILY Ubiquitin-like 1 86 IPR029071 -
Prci5g1164 382 Gene3D - 1 77 - -
Prci5g1164 382 CDD Ubl_Rad23 1 74 - -
Prci5g1164 382 FunFam UV excision repair protein RAD23 B 248 313 - -
Prci5g1164 382 MobiDBLite consensus disorder prediction 79 129 - -
Prci5g1164 382 SMART uba_6 150 190 IPR015940 -
Prci5g1164 382 SMART uba_6 338 375 IPR015940 -
Prci5g1164 382 SUPERFAMILY UBA-like 319 380 IPR009060 GO:0005515
Prci5g1164 382 MobiDBLite consensus disorder prediction 98 127 - -
Prci5g1164 382 Gene3D - 248 313 IPR036353 GO:0003684|GO:0006289|GO:0043161
Prci5g1164 382 NCBIfam UV excision repair protein Rad23 1 381 IPR004806 GO:0006289
Prci5g1164 382 Gene3D - 330 377 - -
Prci5g1164 382 SMART CBM 255 298 IPR006636 -
Prci5g1164 382 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 335 376 IPR015940 -
Prci5g1164 382 SMART ubq_7 1 75 IPR000626 GO:0005515
Prci5g1164 382 SUPERFAMILY XPC-binding domain 253 319 IPR036353 GO:0003684|GO:0006289|GO:0043161
Prci5g1164 382 Pfam XPC-binding domain 257 313 IPR015360 GO:0003684|GO:0006289|GO:0043161
Prci5g1164 382 PRINTS DNA repair protein Rad23 signature 332 348 IPR004806 GO:0006289
Prci5g1164 382 PRINTS DNA repair protein Rad23 signature 349 363 IPR004806 GO:0006289
Prci5g1164 382 PRINTS DNA repair protein Rad23 signature 283 305 IPR004806 GO:0006289
Prci5g1164 382 PRINTS DNA repair protein Rad23 signature 364 379 IPR004806 GO:0006289
Prci5g1164 382 Pfam UBA/TS-N domain 153 188 IPR015940 -
Prci5g1164 382 Pfam UBA/TS-N domain 338 373 IPR015940 -
Prci5g1164 382 CDD UBA1_Rad23_plant 144 193 - -
Prci5g1164 382 Gene3D - 143 193 - -
Prci5g1164 382 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 148 191 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1164 Prci-Chr5 30635626 30642335 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1164 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.189 9.47e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1164 K10839 - gmx:100809066 506.523