Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1163 ATGAAGATATTCGTGAAGACTCTCAAAGGCACCAGCTTCGAAATCGAAGTCAAGCCTGAAGACAAGGTTTCTGAAGTGAAGAAACATATAGAAACTGTTCAGGGTGCAGCTGTCTATCCTGCTGCGCAACAAATGCTTATTCATCAAGGGAAAGTTCTCAAAGATGGTACTACCCTGGAGGAAAATAAAGTGGTTGAAAACAGTTTTGTTGTGATTATGCTGTCGAAGGGTAAGAGCTCATCTGGCGAGGGATCTGCTAGTGCACCTTCAGTTAAGGCTCCTCAGACTAGTTCAGCTCCTACTCCTGCCCCTGTGTCAATGGCCCCTCAAGCTCCTGCTGCAGCTACTTTGTCACCACCACCTCCTGCGCCTGCTCCTGCACCTTCACCTTCACCTTCACCTTCACCAGCTCCAGCTCCAGCTCCAGCTCCTGCTGTGTCAGGGTCTGCTGATATCTATGGACTGGCAGCATCTAATCTTGTTGCTGGGAACAACTTGGAGGGAACAATTCAGCAGATTCTTGATATGGGTGGTGGGAGCTGGGATAGGGATACTGTTGTCCGAGCCCTTCGCGCTGCTTACAACAACCCTGAGAGAGCTGTTGAATACTTGTATACAGGTATCCCAGAGCAAGCTGAAGCCCCCCCTGTGGCTCGTGTGCCTGCCAGTGCTGCACAAGCTGGAAATGCTCCATCTGCAGCTCCACAAGCAGCACAACCTGCACCTGTTCCTCCAAGTGGACCTAATGCTAATCCTTTAGATCTCTTTCCCCAGGGCCTTCCAAATGTTGGTGCTGGTGCAGCTGGTGCTGGCAATCTAGATTTTCTGCGCAACAGTCAACAGTTCCAAGCATTGCGAGGCATGGTGCAGGCTAATCCGCAAATATTGCAGCCTATGCTTCAAGAGCTTGGGAAACAAAATCCTCATCTAATGAGATTGATTCAAGAGCATCAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCGGAAGGTGGTGAGGGGAATATATTAGGGCAGCTGGCTAATGCCATGCCGCAAACAGTAGCTGTCACCCCTGAGGAGCGCCAAGCTATTGAACGTCTCGAAGCAATGGGATTTGATCGAGCACTTGTTTTGGAGGTGTACTTTGCTTGTAACAAAAATGAAGAATTGGCTGCTAATTACCTCTTAGATCATATGCATGAGTTTGAGGAATGA 1197 0.4896 MKIFVKTLKGTSFEIEVKPEDKVSEVKKHIETVQGAAVYPAAQQMLIHQGKVLKDGTTLEENKVVENSFVVIMLSKGKSSSGEGSASAPSVKAPQTSSAPTPAPVSMAPQAPAAATLSPPPPAPAPAPSPSPSPSPAPAPAPAPAVSGSADIYGLAASNLVAGNNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPPVARVPASAAQAGNAPSAAPQAAQPAPVPPSGPNANPLDLFPQGLPNVGAGAAGAGNLDFLRNSQQFQALRGMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPAEGGEGNILGQLANAMPQTVAVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFEE 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1163 398 SUPERFAMILY UBA-like 163 215 IPR009060 GO:0005515
Prci5g1163 398 Pfam XPC-binding domain 273 329 IPR015360 GO:0003684|GO:0006289|GO:0043161
Prci5g1163 398 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Prci5g1163 398 SUPERFAMILY Ubiquitin-like 1 78 IPR029071 -
Prci5g1163 398 SMART uba_6 166 206 IPR015940 -
Prci5g1163 398 SMART uba_6 354 391 IPR015940 -
Prci5g1163 398 FunFam UV excision repair protein RAD23 1 80 - -
Prci5g1163 398 Gene3D - 346 393 - -
Prci5g1163 398 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 351 392 IPR015940 -
Prci5g1163 398 FunFam UV excision repair protein RAD23 homolog 159 209 - -
Prci5g1163 398 SMART CBM 271 314 IPR006636 -
Prci5g1163 398 CDD Ubl_Rad23 1 74 - -
Prci5g1163 398 FunFam UV excision repair protein RAD23 B 264 329 - -
Prci5g1163 398 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 164 207 IPR015940 -
Prci5g1163 398 NCBIfam UV excision repair protein Rad23 1 397 IPR004806 GO:0006289
Prci5g1163 398 MobiDBLite consensus disorder prediction 78 145 - -
Prci5g1163 398 Gene3D - 1 80 - -
Prci5g1163 398 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 387 - -
Prci5g1163 398 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Prci5g1163 398 MobiDBLite consensus disorder prediction 221 249 - -
Prci5g1163 398 FunFam UV excision repair protein RAD23 homolog 345 393 - -
Prci5g1163 398 MobiDBLite consensus disorder prediction 78 104 - -
Prci5g1163 398 PRINTS DNA repair protein Rad23 signature 380 395 IPR004806 GO:0006289
Prci5g1163 398 PRINTS DNA repair protein Rad23 signature 365 379 IPR004806 GO:0006289
Prci5g1163 398 PRINTS DNA repair protein Rad23 signature 348 364 IPR004806 GO:0006289
Prci5g1163 398 PRINTS DNA repair protein Rad23 signature 299 321 IPR004806 GO:0006289
Prci5g1163 398 Gene3D - 264 329 IPR036353 GO:0003684|GO:0006289|GO:0043161
Prci5g1163 398 MobiDBLite consensus disorder prediction 114 143 - -
Prci5g1163 398 Pfam UBA/TS-N domain 169 204 IPR015940 -
Prci5g1163 398 Pfam UBA/TS-N domain 354 389 IPR015940 -
Prci5g1163 398 SMART ubq_7 1 75 IPR000626 GO:0005515
Prci5g1163 398 Gene3D - 159 209 - -
Prci5g1163 398 SUPERFAMILY UBA-like 335 396 IPR009060 GO:0005515
Prci5g1163 398 CDD UBA1_Rad23_plant 160 209 - -
Prci5g1163 398 SUPERFAMILY XPC-binding domain 269 335 IPR036353 GO:0003684|GO:0006289|GO:0043161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1163 Prci-Chr5 30635626 30642335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1163 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.189 7.05e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1163 K10839 - gmx:100809066 513.842