Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1154 ATGACTTCTACTAAGCACGCCGCCAACTCCGTCGGCGGCAAGACTGCCAGAGCCTGCGACAGCTGCATAAGGAAGCGAGCTCGTTGGTACTGTGCCGCCGACGATGCTTTCCTCTGCCAGTCCTGTGACTCTCTGGTTCACTCCGCCAATCAATTGGCTCGTCGCCATGAACGGCTCCGATTAAAAACAGCGTCGTTGAAATCATCTTCCTCCTCCTCCTCCTCCGATGTCCTTGTTTTAGCTGCCATGGATCTCTCTCTGGCTCCCTCATGGCACCGAGGCATCACCAAGAAGGCTCGCACTCCTCGACATGGAAAGAATAACCAGTCTTCCGCCGCACTTGAAACACCCAGAGGACGTTACGAACCCGCCAGAAATCCTTTCCATCTGGTTCCGGAAGTGGGTTCCGATGAGTATTCCAATTCGCATGATGAAAACGAAGAGCAGCTTCTTTATCGGGTACCCATATTCGATCCGTTGGTGACCGAGCTATGTACTCCTCCGTACTCTCTGACTTCGGCTAAAACAGCAACAACAGCAGCGACACCCGGTCGAAACCAGACGGACAATAAAGAGACGAAGCAAGCAGAGAGCAAAGTCTCATCGGCAAATAAAAGCAATAGCGGGGTGGACAATTTACACGGGTTTCTTCCGACGGAAACGGAACTAGCACAGTTTGCTGCCGATGTTGAGAGTTTACTGGGCAGGGGATTAGACAATGAGTGTATAGGCATGGACGATTTGGGGCTAATCGACACTAAAGAGAAGGAATCAAGGGAGTGTTGTGCGGACAGTGAAAAAGTGAAGGTGGAGGATGAAGAGAGCCCTTGTAAGGTCGAGACGACGAGCGAGATGGAGATGGAAATCAGAGAACCGTTTGAATTGAACTTCGACTACGACTCTCCGGCGACACGTGAACAGGCTGACGAGGAGGAGAAGAAGGTCGATTTGGTTATGGCTAATGAGATTAGAAACAACGAAGGAGAGCTCAGAGAAAATAGCAATCAGAGAAAGAAGAAGAAAATACTGTTGCAGTTAGACTACGAAGCAGTCATATCCGCTTGGGCATGTCAAAAATCTCCATGGACGAACGGTGGCAAACCAGACTTCGACCCCGACGATTGTTGGCCGGAGTGCATGAAACAGGGAACGTGTGGGCTGGAGCTTCATCAACCCTACTATGGAGAAATGGGGACGTACGGTTGTCACGCGGGGATCGGAGACGGAGGAAGGGAAGCGAGGGTGTCGAGGTACAGAGAGAAGAGGAGGACGAGGTTGTTCTCGAAGAAAATTAGGTACGAGGTTCGCAAATTGAATGCTGAGAAGAGACCCAGAATGAAAGGGAGGTTCGTAAAGAGAGCTTCGTTCACAGTCCCAGCACCATCTTCGTTTCCTCTGCTCAGCAAATGA 1410 0.5078 MTSTKHAANSVGGKTARACDSCIRKRARWYCAADDAFLCQSCDSLVHSANQLARRHERLRLKTASLKSSSSSSSSDVLVLAAMDLSLAPSWHRGITKKARTPRHGKNNQSSAALETPRGRYEPARNPFHLVPEVGSDEYSNSHDENEEQLLYRVPIFDPLVTELCTPPYSLTSAKTATTAATPGRNQTDNKETKQAESKVSSANKSNSGVDNLHGFLPTETELAQFAADVESLLGRGLDNECIGMDDLGLIDTKEKESRECCADSEKVKVEDEESPCKVETTSEMEMEIREPFELNFDYDSPATREQADEEEKKVDLVMANEIRNNEGELRENSNQRKKKKILLQLDYEAVISAWACQKSPWTNGGKPDFDPDDCWPECMKQGTCGLELHQPYYGEMGTYGCHAGIGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFTVPAPSSFPLLSK 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1154 469 MobiDBLite consensus disorder prediction 176 211 - -
Prci5g1154 469 Pfam CCT motif 411 453 IPR010402 GO:0005515
Prci5g1154 469 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 9 454 - -
Prci5g1154 469 SMART bboxneu5 14 61 IPR000315 GO:0008270
Prci5g1154 469 MobiDBLite consensus disorder prediction 95 145 - -
Prci5g1154 469 CDD Bbox1_BBX-like 18 61 - -
Prci5g1154 469 ProSiteProfiles CCT domain profile. 411 453 IPR010402 GO:0005515
Prci5g1154 469 Pfam B-box zinc finger 16 58 IPR000315 GO:0008270
Prci5g1154 469 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1154 Prci-Chr5 30344067 30345885 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1154 5 453 C2C2-CO-like Transcription Factor Family AT1G25440 45.551 6.41e-108 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Prci5g1154 CCT 1.6e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1154 - - pcin:129311419 942.184