Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1153 ATGACTTCTACTAAGCACGCCGCCAACTCCGTCGGCGGCAAGACTGCCAGAGCCTGCGACAGCTGCATAAGGAAGCGAGCTCGTTGGTACTGTGCCGCCGACGATGCTTTCCTCTGCCAGTCCTGTGACTCTCTGGTTCACTCCGCCAATCAATTGGCTCGTCGCCATGAACGGCTCCGATTAAAAACAGCGTCGTTGAAATCATCTTCCTCCTCCTCCTCCTCCGATGTCCTTGTTTTAGCTGCCATGGATCTCTCTCTGGCTCCCTCATGGCACCGAGGCATCACCAAGAAGGCTCGCACTCCTCGACATGGAAAGAATAACCAGTCTTCCGCCGCACTTGAAACACCCAGAGGACGTTACGAACCCGCCAGAAATCCTTTCCATCTGGTTCCGGAAGTGGGTTCCGATGAGTATTCCAATTCGCATGATGAAAACGAAGAGCAGCTTCTTTATCGGGTACCCATATTCGATCCGTTGGTGACCGAGCTATGTACTCCTCCGTACTCTCTGACTTCGGCTAAAACAGCAACAACAGCAGCGACACCCGGTCGAAACCAGACGGACAATAAAGAGACGAAGCAAGCAGAGAGCAAAGTCTCATCGGCAAATAAAAGCAATAGCGGGGTGGACAATTTACACGGGTTTCTTCCGACGGAAACGGAACTAGCACAGTTTGCTGCCGATGTTGAGAGTTTACTGGGCAGGGGATTAGACAATGAGTGTATAGGCATGGACGATTTGGGGCTAATCGACACTAAAGAGAAGGAATCAAGGGAGTGTTGTGCGGACAGTGAAAAAGTGAAGGTGGAGGATGAAGAGAGCCCTTGTAAGGTCGAGACGACGAGCGAGATGGAGATGGAAATCAGAGAACCGTTTGAATTGAACTTCGACTACGACTCTCCGGCGACACGTGAACAGGCTGACGAGGAGGAGAAGAAGGTCGATTTGGTTATGGCTAATGAGATTAGAAACAACGAAGGAGAGCTCAGAGAAAATAGCAATCAGAGAAAGAAGAAGAAAATACTGTTGCAGTTAGACTACGAAGCAGTCATATCCGCTTGGGCATGTCAAAAATCTCCATGGACGAACGGTGGCAAACCAGACTTCGACCCCGACGATTGTTGGCCGGAGTGCATGGGAACGTGTGGGCTGGAGCTTCATCAACCCTACTATGGAGAAATGGGGACGTACGGTTGTCACGCGGGGATCGGAGACGGAGGAAGGGAAGCGAGGGTGTCGAGGTACAGAGAGAAGAGGAGGACGAGGTTGTTCTCGAAGAAAATTAGGTACGAGGTTCGCAAATTGAATGCTGAGAAGAGACCCAGAATGAAAGGGAGGTTCGTAAAGAGAGCTTCGTTCACAGTCCCAGCACCATCTTCGTTTCCTCTGCTCAGCAAATGA 1404 0.5085 MTSTKHAANSVGGKTARACDSCIRKRARWYCAADDAFLCQSCDSLVHSANQLARRHERLRLKTASLKSSSSSSSSDVLVLAAMDLSLAPSWHRGITKKARTPRHGKNNQSSAALETPRGRYEPARNPFHLVPEVGSDEYSNSHDENEEQLLYRVPIFDPLVTELCTPPYSLTSAKTATTAATPGRNQTDNKETKQAESKVSSANKSNSGVDNLHGFLPTETELAQFAADVESLLGRGLDNECIGMDDLGLIDTKEKESRECCADSEKVKVEDEESPCKVETTSEMEMEIREPFELNFDYDSPATREQADEEEKKVDLVMANEIRNNEGELRENSNQRKKKKILLQLDYEAVISAWACQKSPWTNGGKPDFDPDDCWPECMGTCGLELHQPYYGEMGTYGCHAGIGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFTVPAPSSFPLLSK 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1153 467 MobiDBLite consensus disorder prediction 176 211 - -
Prci5g1153 467 SMART bboxneu5 14 61 IPR000315 GO:0008270
Prci5g1153 467 ProSiteProfiles CCT domain profile. 409 451 IPR010402 GO:0005515
Prci5g1153 467 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 9 452 - -
Prci5g1153 467 MobiDBLite consensus disorder prediction 95 145 - -
Prci5g1153 467 Pfam CCT motif 409 451 IPR010402 GO:0005515
Prci5g1153 467 CDD Bbox1_BBX-like 18 61 - -
Prci5g1153 467 Pfam B-box zinc finger 16 58 IPR000315 GO:0008270
Prci5g1153 467 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1153 Prci-Chr5 30344067 30345885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1153 5 451 C2C2-CO-like Transcription Factor Family AT1G25440 45.551 6.21e-107 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Prci5g1153 CCT 1.6e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1153 - - pcin:129311419 933.324