Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1142 ATGCCTTTCTCCAATGGCAGCCGATTGGATCAAGGACTCAAGCTTCCACTGATTCAGTCACCAGACAGCTTTGGACAGAAGTTATCTTCCCCACATTCTGCAGATTCTCCAGAAATTAGTAAGAAAGCAGTTGGATTCAAAAGGAAGAGAAGCAATAACAGGATTGAAGAGAAGCAGAAAGAAGTAATCCATGTCAGGGCAAAAAGAGGTCAAGCTACTGATAGTCACAGTTTAGCAGAACGGGTGAGAAGAGAGAAGATCAATGAAAAGCTAAGATGCTTGCAGGACTTGGTTCCAGGATGTTACAAGGCAATGGGAATGGCAGTTATGTTAGATGTGATCATAAACTACGTTCTGTCACTACAGCAACAGATTGAGTTTCTCTCCATGAAGCTCTCAGCAGCAAGCATGTGTTTTGATTTCAACACCTACGAGATGAATACCATCCAAACCATGCAGAGAAGTCCTAGCACAGATAGAGTCCAAGGGATGGAAAGGATGGAAGGAGAAGGTTATCAAGGCTTTGCTTATTGGAACCCTACATGGCCGCTTCAGTAG 558 0.4355 MPFSNGSRLDQGLKLPLIQSPDSFGQKLSSPHSADSPEISKKAVGFKRKRSNNRIEEKQKEVIHVRAKRGQATDSHSLAERVRREKINEKLRCLQDLVPGCYKAMGMAVMLDVIINYVLSLQQQIEFLSMKLSAASMCFDFNTYEMNTIQTMQRSPSTDRVQGMERMEGEGYQGFAYWNPTWPLQ 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1142 185 MobiDBLite consensus disorder prediction 18 51 - -
Prci5g1142 185 Pfam Helix-loop-helix DNA-binding domain 75 99 IPR011598 GO:0046983
Prci5g1142 185 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 140 IPR036638 GO:0046983
Prci5g1142 185 Gene3D - 71 134 IPR036638 GO:0046983
Prci5g1142 185 SMART finulus 77 127 IPR011598 GO:0046983
Prci5g1142 185 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 121 IPR011598 GO:0046983
Prci5g1142 185 MobiDBLite consensus disorder prediction 22 36 - -
Prci5g1142 185 CDD bHLH_AtBPE_like 61 142 - -
Prci5g1142 185 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 40 150 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1142 Prci-Chr5 30135923 30137110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1142 57 153 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G25330 77.320 3.98e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci5g1142 HLH 5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1142 - - pcin:129300422 370.933