Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1141 ATGTCTACTATTTCGAAGAGAGATAAGACTTGTTCTAAGGAGGAAGAAGAGAGTACTGAGATGAGACGAGGCCCTTGGACTCTTGAAGAAGACAGCCTCCTCATCCACTATATTGCTCGCCATGGTGAGGGTCGCTGGAATATGTTAGCAAAAAGTGCTGGATTGAAGAGGAATGGGAAAAGTTGCAGACTCAGATGGCTTAATTACTTGAAACCAGATATCAAGCGAGGAAACCTTACCCCGCAAGAACAGCTCTTAATCCTAGAACTTCATTCTAGGTGGGGTAACAGGTGGTCGAAAATTGCTCAGCATCTGCCAGGAAGAACTGATAATGAGATCAAGAACTATTGGAGAACCAGAGTGCAGAAACAAGCACGCCATCTTAATATTGAATCTGGAAGCAAGAAATTCATTGATGCGGTTCGGTGTTTCTGGATGCCAAGATTGGTTCAAAAGGTTGAACAGAAACAGAATTCTTCTCCTTGTACTGCTGCTGCTGCTGCTTCGTACTCTTGTTCTCTCACAGCAGGCACGAACCTTCATGTTTCTTCTTCATCATCTTCCCCAATGTTGTCAACCTGCAACAACTCTGTTATGCCTTCTCTGTCTTCATCATCATCACCAATATCATCTTTCCAGGCAAATTTTCCCAGCAATTTCTGCTCCAATCCCAGCAATTTTCCCTCTGATTCCTGGCAATTCTCGCAGGTTCTGGAACCTCCTAATTCAGAACTCCCAGCAAGTAGCTCTTATTATTTGTTGGAGAACAATGCTTTTTACAGCAACCCAATTCAGGAAAACTTGTTGGTGAACAATAACATTATGGGTACTCATGGGTATGAAATCATGGATTATAATAATCTGATCAATAATCATCAGCAGGAACCAGCGACAATGATGGAAACTTATGACATGTTGCCGTTTGATTATTATCAGCCAGTGGCAGAAAATGACTGGACGTTAGGAAACATGGCAGAGACTTTATGGAACATGGAAGCTCTGTGA 1005 0.4249 MSTISKRDKTCSKEEEESTEMRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRNGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLNIESGSKKFIDAVRCFWMPRLVQKVEQKQNSSPCTAAAAASYSCSLTAGTNLHVSSSSSSPMLSTCNNSVMPSLSSSSSPISSFQANFPSNFCSNPSNFPSDSWQFSQVLEPPNSELPASSSYYLLENNAFYSNPIQENLLVNNNIMGTHGYEIMDYNNLINNHQQEPATMMETYDMLPFDYYQPVAENDWTLGNMAETLWNMEAL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1141 334 SMART sant 75 123 IPR001005 -
Prci5g1141 334 SMART sant 22 72 IPR001005 -
Prci5g1141 334 FunFam Myb transcription factor 23 75 - -
Prci5g1141 334 SUPERFAMILY Homeodomain-like 21 117 IPR009057 -
Prci5g1141 334 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 38 47 IPR001345 GO:0003824
Prci5g1141 334 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Prci5g1141 334 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Prci5g1141 334 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 17 195 IPR044676 GO:0003700|GO:0006355|GO:0043565
Prci5g1141 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
Prci5g1141 334 Gene3D - 23 75 - -
Prci5g1141 334 Pfam Myb-like DNA-binding domain 76 119 IPR001005 -
Prci5g1141 334 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Prci5g1141 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 70 IPR017930 -
Prci5g1141 334 CDD SANT 80 119 IPR001005 -
Prci5g1141 334 MobiDBLite consensus disorder prediction 1 23 - -
Prci5g1141 334 CDD SANT 25 70 IPR001005 -
Prci5g1141 334 Gene3D - 79 121 - -
Prci5g1141 334 FunFam MYB transcription factor 80 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1141 Prci-Chr5 30121095 30122711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1141 20 172 MYB Transcription Factor Family AT1G68320 77.778 4.71e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci5g1141 Myb_DNA-binding 5.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1141 K09422 - gmx:100780759 347.051