LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci5g1118	ATGGTTCTACCAGTTCATGTCGTCTTCTTCTTCTTCTTCTTGTTTCTTTACCATGTGCTTTCTCTGTCTTCTGCTTCTTCGGAGTGCCCACGTTCCTTTTACTGTGGAAATCTGGGCGAGTTTTGGTTCCCTTTCACCACCGCAGAACACAAAGACTGTGGAATGTTGGCGATTCATGGTTGTGAAGACTTTAACTCTACAAAAACTGTGTACTTCTTCAGTGGAAAACAGAAGTTTCCAGTGACGTATATAAACAGCTTTCATAAAATTGTTTATGTCAGAGACACAGATTTACAAAGGCGTTTGGAAAATAATAGCTGTGATGCCTTCTGCTGCAATATCACTCTTCCTCCCAGCTCACCTATGGGCCAATTTCAGATCTTCCTAACTATAACCCTATACAGATGTAATAATAGTAACCTTCAAGTTAGTCCTCCAAAGCAATTTCTGAACTACAAAGGATGTGCCAAGAGTAGGAATGAGACGATCTACTTCAGAACTCAAGATCAAGATGATCCTTCACCTTCTTTGGCAGCATGTCCAAGGGTTAGGCTCCCAGCGAGCCCTGCTATTTTTCTATCTGGGGATCCATTTAAATTCATAACTCCTGAATTCGTCGTTTATATTCAACTTTCTAATGACTGTCAACGGTGTCTTGATGGAGGAGGCTTATGTCGAGTCAATGGCACGGGAGAATTTTTCTGTTCCAGATCCAAAGTGATGGCAGATAAAAGGCGGGCTTTGAAGCTGCGATTGCTTATTGGTTTTGGAGTGGGATTAGGGATCCTTGTACTAACATTGGCGATCATCTTCCGAGGCTGCAAACAGAGGCAGAAAAATGCTCTGTCCCATGTTCGACTCCGATCAATAAATCAACACCGGAATGAACCAGATCCAGATAGTGGAAGACTCTTCCTTGGAGTTCCAATCTTCTCCTACAAAGAACTTCAAGATGCAACCAACAATTTTGATCCCTCCAACAAACTTGGAGATGGTGGCTTTGGCTCTGTTTACTATGGGAAGCTTCAAGATGAGCGTGAAGTTGCAGTGAAACATCTATTCCATCACAACTATAAGCGAGTAGAACAGTTCATGACTGAAGTTGAGATTCTCACTCGTTTGCGTCACAAGAATCTTGTGTCCCTCTATGGCTGCACTTCACGTCAAAGCCATGAGCTCCTCCTTGTCTATGAATACATTCCAAATGGCACCCTAGCCAGTCACCTTCGTGGTCACTCTGCAAATCCTACATTGTTGACTTGGCCTACACGTATCAAAATTGCCATAGAAACTGCAAGTGCTCTAGCTTACCTTCATGCTTCCGGCATCATCCATCGTGATGTCAAAACCAACAACATTCTCCTTGACAACAATTTTTGTGTTAAGGTTGCTGATTTTGGACTTTCTAGGTTGTTTCCTGATGATGTATCGCATGTTTCTACAGCTCCTCAAGGAACACCAGGTTATCTTGATCCAGAGTATCACTTTTGCTTTAGGCTAACAAATAAAAGCGATGTGTATAGCTTTGGGGTTGTGCTCATGGAATTGATATCTTTAATGCCGGCAGTTGATATGGGACGGAATAAAGATGAGATTACATTGGCAAATCTAGCAATGAGAAAGATTCAGAGAAGTGAATTTGAGGAGCTCGTAGATCCATGTCTGAGGATTGAAAAGGATAGTGAGGTGAAGAAGAAGGTGGTTGCCGTTGGAGAATTAGCATTTCAATGTTTGCAAATAAATAATGAGATGAGGCCATCCATTGATGAGGTTTTAGATGTTTTGAGGAAAATTGAGAGTTGTAAAGAAGATGATGAGAATGCAAGGGAAGACAGTGAAGACGGCGGTGCTGTAATTTCAAAGAATGAAGCAGAAATACAAGCACGACCAGTGACTTCAATAAACTTTGATAAGGCGAAGTTGTTCAAATTACCATCTTCACCAAACAACATGATTGAGAAATGGAGAAATGGAAAAGTTGATCAGGCAAAATTGTTTAGCGTTTGA	2007	0.415	MVLPVHVVFFFFFLFLYHVLSLSSASSECPRSFYCGNLGEFWFPFTTAEHKDCGMLAIHGCEDFNSTKTVYFFSGKQKFPVTYINSFHKIVYVRDTDLQRRLENNSCDAFCCNITLPPSSPMGQFQIFLTITLYRCNNSNLQVSPPKQFLNYKGCAKSRNETIYFRTQDQDDPSPSLAACPRVRLPASPAIFLSGDPFKFITPEFVVYIQLSNDCQRCLDGGGLCRVNGTGEFFCSRSKVMADKRRALKLRLLIGFGVGLGILVLTLAIIFRGCKQRQKNALSHVRLRSINQHRNEPDPDSGRLFLGVPIFSYKELQDATNNFDPSNKLGDGGFGSVYYGKLQDEREVAVKHLFHHNYKRVEQFMTEVEILTRLRHKNLVSLYGCTSRQSHELLLVYEYIPNGTLASHLRGHSANPTLLTWPTRIKIAIETASALAYLHASGIIHRDVKTNNILLDNNFCVKVADFGLSRLFPDDVSHVSTAPQGTPGYLDPEYHFCFRLTNKSDVYSFGVVLMELISLMPAVDMGRNKDEITLANLAMRKIQRSEFEELVDPCLRIEKDSEVKKKVVAVGELAFQCLQINNEMRPSIDEVLDVLRKIESCKEDDENAREDSEDGGAVISKNEAEIQARPVTSINFDKAKLFKLPSSPNNMIEKWRNGKVDQAKLFSV	668

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci5g1118	668	Pfam	Protein tyrosine and serine/threonine kinase	327	593	IPR001245	GO:0004672\|GO:0006468
	Prci5g1118	668	MobiDBLite	consensus disorder prediction	603	622	-	-
	Prci5g1118	668	ProSiteProfiles	Protein kinase domain profile.	323	598	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci5g1118	668	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4	7	656	IPR044652	GO:0004672
	Prci5g1118	668	SMART	serkin_6	323	602	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci5g1118	668	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	443	455	IPR008271	GO:0004672\|GO:0006468
	Prci5g1118	668	PRINTS	Tyrosine kinase catalytic domain signature	437	455	IPR001245	GO:0004672\|GO:0006468
	Prci5g1118	668	PRINTS	Tyrosine kinase catalytic domain signature	504	526	IPR001245	GO:0004672\|GO:0006468
	Prci5g1118	668	PRINTS	Tyrosine kinase catalytic domain signature	397	410	IPR001245	GO:0004672\|GO:0006468
	Prci5g1118	668	Gene3D	Transferase(Phosphotransferase) domain 1	400	613	-	-
	Prci5g1118	668	FunFam	Wall-associated receptor kinase-like 20	400	608	-	-
	Prci5g1118	668	ProSitePatterns	Protein kinases ATP-binding region signature.	329	351	IPR017441	GO:0005524
	Prci5g1118	668	SUPERFAMILY	Protein kinase-like (PK-like)	303	595	IPR011009	-
	Prci5g1118	668	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	306	399	-	-
	Prci5g1118	668	CDD	STKc_IRAK	329	598	-	-
	Prci5g1118	668	Gene3D	Phosphorylase Kinase; domain 1	299	399	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci5g1118	Prci-Chr5	29881154	29883893	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci5g1118	31	655	Receptor kinase-like Gene Family	AT1G25390	42.812	5.29e-150	447

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK_LRK10L-1	Prci5g1118		PK_Tyr_Ser-Thr	1.7e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci5g1118	-		-	gmx:100789176	598.586