LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci5g1116	ATGACAGAAGTTGAGATTCTCACTTGCTTGCGTCACAAAAATCTTGTGTCCCTATATGGCTGCACTTCTCGTCAAAGTCGTGAGCTCCTCCTTGTCTATGAATACATCCCAAATGGCACTCTTGCCAGTCACCTTCGTAGCCACTCTACAAAGCCTACTTTGCTGGCATGGCCTACACGTATCAAAATTGCTATAGAAACTGCAAGTGCATTGGCTTACCTTCATGCTTCCGGGATCATCCATCGTGATGTCAAAACCAACAACATTCTCCTTGACAACAACTTATGTGTTAAGGCTGCAGATTTTGGACTTTCTAGGTTGTTCCCTGAGGATATATCCCATGTTTCTACAGCTCCACAAGGAAGACCAGGTTATCTTGACCCAAAGTATCACTTTTGCTTCAGGCTGACAAATAACAGTGATGTATATAGCTTTGGAGTTGTGCTCATTGAGTTGATATCTTCTTTGCCAGTGGTTGATATGGGAAGGAATAATTGTGAGATTACATTGGGGAGTCTTGCAGTGAGGAAGATTCAGAGAAATGAATTTGAGGAGCTGGTTGATCCATGTTTAGGGATTGAGAAGGATAGTGAATTAAAAAGGAAAGTGACTGCGATGGGAGAACTAGCATTTCAGTGTTTGCAAATAAAAAGTGAGATGAGACCTTCTATTGATGAGGTTTTAGATATTTTGAGGGAAATTGAGAGGGAGAAAAAAGATAGTAAGGATGCCAAGGAAGACAATGACAATGGTGGCAGTGGAATTTCAAAGAATAAAGCAGGTATTGATGCAGCACAACCCATGATGGCTTCAATAACCCTTAATCAAGCAACGTTCTTCAAGTCATCGTCTTCACCAAACAATGTTACTGAGAAATGGACAAGTGAATCTACTAATCCTAATTTGAGCGTTTAA	915	0.4077	MTEVEILTCLRHKNLVSLYGCTSRQSRELLLVYEYIPNGTLASHLRSHSTKPTLLAWPTRIKIAIETASALAYLHASGIIHRDVKTNNILLDNNLCVKAADFGLSRLFPEDISHVSTAPQGRPGYLDPKYHFCFRLTNNSDVYSFGVVLIELISSLPVVDMGRNNCEITLGSLAVRKIQRNEFEELVDPCLGIEKDSELKRKVTAMGELAFQCLQIKSEMRPSIDEVLDILREIEREKKDSKDAKEDNDNGGSGISKNKAGIDAAQPMMASITLNQATFFKSSSSPNNVTEKWTSESTNPNLSV	304

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci5g1116	304	PRINTS	Tyrosine kinase catalytic domain signature	33	46	IPR001245	GO:0004672\|GO:0006468
	Prci5g1116	304	PRINTS	Tyrosine kinase catalytic domain signature	140	162	IPR001245	GO:0004672\|GO:0006468
	Prci5g1116	304	PRINTS	Tyrosine kinase catalytic domain signature	73	91	IPR001245	GO:0004672\|GO:0006468
	Prci5g1116	304	MobiDBLite	consensus disorder prediction	281	304	-	-
	Prci5g1116	304	MobiDBLite	consensus disorder prediction	238	252	-	-
	Prci5g1116	304	MobiDBLite	consensus disorder prediction	238	262	-	-
	Prci5g1116	304	Coils	Coil	224	247	-	-
	Prci5g1116	304	Gene3D	Transferase(Phosphotransferase) domain 1	37	259	-	-
	Prci5g1116	304	ProSiteProfiles	Protein kinase domain profile.	1	234	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci5g1116	304	SMART	serkin_6	1	230	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci5g1116	304	Pfam	Protein tyrosine and serine/threonine kinase	1	229	IPR001245	GO:0004672\|GO:0006468
	Prci5g1116	304	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	79	91	IPR008271	GO:0004672\|GO:0006468
	Prci5g1116	304	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4	1	297	IPR044652	GO:0004672
	Prci5g1116	304	SUPERFAMILY	Protein kinase-like (PK-like)	2	235	IPR011009	-
	Prci5g1116	304	Gene3D	Phosphorylase Kinase; domain 1	1	36	-	-
	Prci5g1116	304	FunFam	Wall-associated receptor kinase-like 20	36	244	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci5g1116	Prci-Chr5	29775896	29779387	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci5g1116	1	304	Receptor kinase-like Gene Family	AT1G25390	54.723	7.10e-104	315

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK_LRK10L-1	Prci5g1116		PK_Tyr_Ser-Thr	1.8e-36	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci5g1116	-		-	pcin:129310605	605.134