Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1096 ATGGGGGAAGATTTCTACCAAGGCAAAGATGATAATGATGAGGATGGCATGATTGACCTGGGACTTAGCCTCAGAACTGTCCAGCCTGAAGCTTATCATTCTTCTAGCAACTTTTTAAGCTTGTGGAGATATGATGACCTCATGGATTGGCCTGAGTCTAATAATCTCAACCTCAAGAGCTCAAGCACAATGCATTCAAAATCCGTCCCAGAGAACTTTGATGAGGAAATAGAAGGTGTTCAGAGCAATGATAGGTGGGCTTATGTGAAAGTTATCATGGATGGTGTTACAGTAGGCAGAAAAATTTGTGTTCTTGATCATGAAGGATATCCAAGTCTTGCAAACCAGTTAGAAAACATGTTTGGAAGCAAATCTGTTTCTGGTTTGAAACTGTTCCAATCTGAGTCAGAGTATTTACTGTTCTACAAAGACAGAGAAGATCATTGGAGAACAGTAGGTGATGTCCCATGGAAAGAGTTTGTAGAAAGCGTGAAGAGGTTGAGGATTGCAAGAAAGAATACAACCTAA 528 0.4034 MGEDFYQGKDDNDEDGMIDLGLSLRTVQPEAYHSSSNFLSLWRYDDLMDWPESNNLNLKSSSTMHSKSVPENFDEEIEGVQSNDRWAYVKVIMDGVTVGRKICVLDHEGYPSLANQLENMFGSKSVSGLKLFQSESEYLLFYKDREDHWRTVGDVPWKEFVESVKRLRIARKNTT 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1096 175 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 45 173 IPR003311 GO:0005634|GO:0006355
Prci5g1096 175 Gene3D - 81 175 - -
Prci5g1096 175 ProSiteProfiles PB1 domain profile. 86 174 IPR000270 GO:0005515
Prci5g1096 175 Pfam AUX/IAA family 68 172 IPR033389 -
Prci5g1096 175 SUPERFAMILY CAD & PB1 domains 85 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1096 Prci-Chr5 29599943 29601558 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1096 81 169 B3 DNA Binding Superfamily AT1G59750 37.079 1.62e-08 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Prci5g1096 AUX_IAA 2.1e-22 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1096 K14484 - gmx:100793397 249.21