Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1076 ATGAAAAATGCTCCCAAGTTAATGTCATCTACAACTCAATGGAGGCAGTCACACTCATTCAATATGACCATTTCCAAGATCACCCCTATCAAAAAGATCAGAGACTTTATCATGCAAATTTGGATCATCACATTCATTACTGTTACTGATGAGGCAAAAGCGGCTGTGTCCATGATCTGTCATTCTGAAGAAAGCCAATTCAACCTGGTAATGGCTAAAGCTAACATGCCTGACATGGATACCCTTTCATTTCTGGACTTCATGCTTGAAAAGTACGTCCCTGTCATCTTCATCTCTTCTGGAGAATATAAGGATGATGTAACATGGAAAGCATTGGCTAACGGCTCATGTTATTTCTTGGAAGAACCAGTCCTTTTACAGGATCTTAAATATGTGTGGCAGCATGTTTATCACACACAAGTCAACTTGGCCAACAGAACTCAAGAAGAAAATTGTGCAAACGAGGTTCATGGAACTCTTGATGATAGAAAATGTATGGAAAAAGAGAAGAGAAAAAGGTTCCATATGAATTTTGACAGCAATCACCTCACTGCTTTTATGGAGGAGGAGGAAGAGGAGGATACAGAAAGAGAACAAAACTATGATGAACATCCTGAGAAAAGGCCCCGTATTGTTTGGACTCCTGAGTTGCATCAGAAGTTCTTGGATGCCATTAATGTTTTGAGTGACGGGAATAATATTCGTCCAAAAGCTATACTTGAACAGATGAATGTGCCTAACCTCACAGCTCGCCAAATTTCAAGTCATCTTCAGAAATACAGAACTCAAGAATTGATAAACCAGCAGGCTTGCATGTCTGGATTCGCTCCAATGAGAAAATTTTCAAACCTTGATATTAGATCCCAGTCTTCCTCACCATTTCAGAGCCAAAGTTATCCAGGTTTTCCTATATCAATTGCAGCCCTTAGTGGGCGCCAAAATCAAAACCAGTGTTCAATGATTTTCATTGAAACTCAAGAATCTGACATGGCACAAATGGAAGAACCCGCGCCAATTCAAGATAAATTTCCAGCAGCATTGAGCAATTATGGAAGCCAAAACCTAGAAGCTGAAGTGGGACAACCTCTACCAGATGCTTCAATGGACCAAAACCAACCCATGACAGATGGTACTTTGACTATACTTGAGGAAGATTGTGAAGAACATGACTATTCTCAAAATGGAGTACTTCCAGATCAAATTGATCAATACTGTGAGATGCTAAGGAACACTCTTCTAAGAAATAATAATAGCACTCATCTTCAAGACCCTGATGTCTGA 1281 0.3973 MKNAPKLMSSTTQWRQSHSFNMTISKITPIKKIRDFIMQIWIITFITVTDEAKAAVSMICHSEESQFNLVMAKANMPDMDTLSFLDFMLEKYVPVIFISSGEYKDDVTWKALANGSCYFLEEPVLLQDLKYVWQHVYHTQVNLANRTQEENCANEVHGTLDDRKCMEKEKRKRFHMNFDSNHLTAFMEEEEEEDTEREQNYDEHPEKRPRIVWTPELHQKFLDAINVLSDGNNIRPKAILEQMNVPNLTARQISSHLQKYRTQELINQQACMSGFAPMRKFSNLDIRSQSSSPFQSQSYPGFPISIAALSGRQNQNQCSMIFIETQESDMAQMEEPAPIQDKFPAALSNYGSQNLEAEVGQPLPDASMDQNQPMTDGTLTILEEDCEEHDYSQNGVLPDQIDQYCEMLRNTLLRNNNSTHLQDPDV 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1076 426 MobiDBLite consensus disorder prediction 185 207 - -
Prci5g1076 426 NCBIfam myb-like DNA-binding domain, SHAQKYF class 209 263 IPR006447 GO:0003677
Prci5g1076 426 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 186 358 IPR044841 GO:0003700|GO:0006355
Prci5g1076 426 Gene3D - 205 265 - -
Prci5g1076 426 SUPERFAMILY CheY-like 51 144 IPR011006 -
Prci5g1076 426 Gene3D - 30 151 - -
Prci5g1076 426 Pfam Myb-like DNA-binding domain 213 261 IPR001005 -
Prci5g1076 426 FunFam Two-component response regulator 204 265 - -
Prci5g1076 426 SUPERFAMILY Homeodomain-like 207 262 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1076 Prci-Chr5 29453959 29459476 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1076 46 273 Response Regulator Gene Family AT2G25180 32.636 6.60e-26 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Prci5g1076 Myb_DNA-binding 1.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1076 - - pcin:129311678 838.565