Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1073 ATGCTTGAGAAATACTCATTCAGAGTTACTGTTACTGATGAGGCAAAAGCGGCTGTGTCCATGATCTGTCATTCTGAAGAAAGCCAATTCAACCTGGTAATGGCTAAAGCTAACATGCCTGACATGGATACCCTTTCATTTCTGGACTTCATGCTTGAAAAGTACGTCCCTGTCATCTTCATCTCTTCTGGAGAATATAAGGATGATGTAACATGGAAAGCATTGGCTAACGGCTCATGTTATTTCTTGGAAGAACCAGTCCTTTTACAGGATCTTAAATATGTGTGGCAGCATGTTTATCACACACAAGTCAACTTGGCCAACAGAACTCAAGAAGAAAATTGTGCAAACGAGGTTCATGGAACTCTTGATGATAGAAAATGTATGGAAAAAGAGAAGAGAAAAAGGTTCCATATGAATTTTGACAGCAATCACCTCACTGCTTTTATGGAGGAGGAGGAAGAGGAGGATACAGAAAGAGAACAAAACTATGATGAACATCCTGAGAAAAGGCCCCGTATTGTTTGGACTCCTGAGTTGCATCAGAAGTTCTTGGATGCCATTAATGTTTTGAGTGACGGGAATAATATTCGTCCAAAAGCTATACTTGAACAGATGAATGTGCCTAACCTCACAGCTCGCCAAATTTCAAGTCATCTTCAGAAATACAGAACTCAAGAATTGATAAACCAGCAGGCTTGCATGTCTGGATTCGCTCCAATGAGAAAATTTTCAAACCTTGATATTAGATCCCAGTCTTCCTCACCATTTCAGAGCCAAAGTTATCCAGGTTTTCCTATATCAATTGCAGCCCTTAGTGGGCGCCAAAATCAAAACCAGTGTTCAATGATTTTCATTGAAACTCAAGAATCTGACATGGCACAAATGGAAGAACCCGCGCCAATTCAAGATAAATTTCCAGCAGCATTGAGCAATTATGGAAGCCAAAACCTAGAAGCTGAAGTGGGACAACCTCTACCAGATGCTTCAATGGACCAAAACCAACCCATGACAGATGGTACTTTGACTATACTTGAGGAAGATTGTGAAGAACATGACTATTCTCAAAATGGAGTACTTCCAGATCAAATTGATCAATACTGTGAGATGCTAAGGAACACTCTTCTAAGAAATAATAATAGCACTCATCTTCAAGACCCTGATGTCTGA 1170 0.4 MLEKYSFRVTVTDEAKAAVSMICHSEESQFNLVMAKANMPDMDTLSFLDFMLEKYVPVIFISSGEYKDDVTWKALANGSCYFLEEPVLLQDLKYVWQHVYHTQVNLANRTQEENCANEVHGTLDDRKCMEKEKRKRFHMNFDSNHLTAFMEEEEEEDTEREQNYDEHPEKRPRIVWTPELHQKFLDAINVLSDGNNIRPKAILEQMNVPNLTARQISSHLQKYRTQELINQQACMSGFAPMRKFSNLDIRSQSSSPFQSQSYPGFPISIAALSGRQNQNQCSMIFIETQESDMAQMEEPAPIQDKFPAALSNYGSQNLEAEVGQPLPDASMDQNQPMTDGTLTILEEDCEEHDYSQNGVLPDQIDQYCEMLRNTLLRNNNSTHLQDPDV 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1073 389 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 261 IPR045279 GO:0009736
Prci5g1073 389 FunFam Two-component response regulator 167 228 - -
Prci5g1073 389 SUPERFAMILY Homeodomain-like 170 225 IPR009057 -
Prci5g1073 389 SUPERFAMILY CheY-like 1 107 IPR011006 -
Prci5g1073 389 NCBIfam myb-like DNA-binding domain, SHAQKYF class 172 226 IPR006447 GO:0003677
Prci5g1073 389 MobiDBLite consensus disorder prediction 148 170 - -
Prci5g1073 389 Gene3D - 1 138 - -
Prci5g1073 389 Pfam Myb-like DNA-binding domain 176 224 IPR001005 -
Prci5g1073 389 Gene3D - 168 228 - -
Prci5g1073 389 ProSiteProfiles Response regulatory domain profile. 1 100 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1073 Prci-Chr5 29452468 29459476 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1073 1 236 Response Regulator Gene Family AT2G25180 33.065 5.25e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Prci5g1073 Myb_DNA-binding 9.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1073 - - pcin:129311678 747.658