Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1072 ATGCTTGAGAAATACTCATTCAGAGCCTATGTTGGAATGAAAAATGCTCCCAAGTTAATGTCATCTACAACTCAATGGAGGCAGTCACACTCATTCAATATGACCATTTCCAAGATCACCCCTATCAAAAAGATCAGAGACTTTATCATGCAAATTTGGATCATCACATTCATTACTGTTACTGATGAGGCAAAAGCGGCTGTGTCCATGATCTGTCATTCTGAAGAAAGCCAATTCAACCTGGTAATGGCTAAAGCTAACATGCCTGACATGGATACCCTTTCATTTCTGGACTTCATGCTTGAAAAGTACGTCCCTGTCATCTTCATCTCTTCTGGAGAATATAAGGATGATGTAACATGGAAAGCATTGGCTAACGGCTCATGTTATTTCTTGGAAGAACCAGTCCTTTTACAGGATCTTAAATATGTGTGGCAGCATGTTTATCACACACAAGTCAACTTGGCCAACAGAACTCAAGAAGAAAATTGTGCAAACGAGGTTCATGGAACTCTTGATGATAGAAAATGTATGGAAAAAGAGAAGAGAAAAAGGTTCCATATGAATTTTGACAGCAATCACCTCACTGCTTTTATGGAGGAGGAGGAAGAGGAGGATACAGAAAGAGAACAAAACTATGATGAACATCCTGAGAAAAGGCCCCGTATTGTTTGGACTCCTGAGTTGCATCAGAAGTTCTTGGATGCCATTAATGTTTTGAGTGACGGGAATAATATTCGTCCAAAAGCTATACTTGAACAGATGAATGTGCCTAACCTCACAGCTCGCCAAATTTCAAGTCATCTTCAGAAATACAGAACTCAAGAATTGATAAACCAGCAGGCTTGCATGTCTGGATTCGCTCCAATGAGAAAATTTTCAAACCTTGATATTAGATCCCAGTCTTCCTCACCATTTCAGAGCCAAAGTTATCCAGGTTTTCCTATATCAATTGCAGCCCTTAGTGGGCGCCAAAATCAAAACCAGTGTTCAATGATTTTCATTGAAACTCAAGAATCTGACATGGCACAAATGGAAGAACCCGCGCCAATTCAAGATAAATTTCCAGCAGCATTGAGCAATTATGGAAGCCAAAACCTAGAAGCTGAAGTGGGACAACCTCTACCAGATGCTTCAATGGACCAAAACCAACCCATGACAGATGGTACTTTGACTATACTTGAGGAAGATTGTGAAGAACATGACTATTCTCAAAATGGAGTACTTCCAGATCAAATTGATCAATACTGTGAGATGCTAAGGAACACTCTTCTAAGAAATAATAATAGCACTCATCTTCAAGACCCTGATGTCTGA 1317 0.3971 MLEKYSFRAYVGMKNAPKLMSSTTQWRQSHSFNMTISKITPIKKIRDFIMQIWIITFITVTDEAKAAVSMICHSEESQFNLVMAKANMPDMDTLSFLDFMLEKYVPVIFISSGEYKDDVTWKALANGSCYFLEEPVLLQDLKYVWQHVYHTQVNLANRTQEENCANEVHGTLDDRKCMEKEKRKRFHMNFDSNHLTAFMEEEEEEDTEREQNYDEHPEKRPRIVWTPELHQKFLDAINVLSDGNNIRPKAILEQMNVPNLTARQISSHLQKYRTQELINQQACMSGFAPMRKFSNLDIRSQSSSPFQSQSYPGFPISIAALSGRQNQNQCSMIFIETQESDMAQMEEPAPIQDKFPAALSNYGSQNLEAEVGQPLPDASMDQNQPMTDGTLTILEEDCEEHDYSQNGVLPDQIDQYCEMLRNTLLRNNNSTHLQDPDV 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1072 438 MobiDBLite consensus disorder prediction 197 219 - -
Prci5g1072 438 Pfam Myb-like DNA-binding domain 225 273 IPR001005 -
Prci5g1072 438 Gene3D - 217 277 - -
Prci5g1072 438 SUPERFAMILY Homeodomain-like 219 274 IPR009057 -
Prci5g1072 438 Gene3D - 42 163 - -
Prci5g1072 438 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 197 369 IPR044841 GO:0003700|GO:0006355
Prci5g1072 438 SUPERFAMILY CheY-like 63 156 IPR011006 -
Prci5g1072 438 NCBIfam myb-like DNA-binding domain, SHAQKYF class 221 275 IPR006447 GO:0003677
Prci5g1072 438 FunFam Two-component response regulator 216 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1072 Prci-Chr5 29452468 29459476 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1072 58 285 Response Regulator Gene Family AT2G25180 33.333 1.07e-25 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Prci5g1072 Myb_DNA-binding 1.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1072 - - pcin:129311678 846.654