Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1070 ATGGAAGATAGTGATTTCTTATCGATTAGTTCCATTCCCAGTTTTGCTCGAGGACTTAAGATTTTGCTGGTTCATAATGATTCCTTGTCCATCGTCAGCTTGTCCTCTATGCTTGAGAAATACTCATTCAGAGTTACTGTTACTGATGAGGCAAAAGCGGCTGTGTCCATGATCTGTCATTCTGAAGAAAGCCAATTCAACCTGGTAATGGCTAAAGCTAACATGCCTGACATGGATACCCTTTCATTTCTGGACTTCATGCTTGAAAAGTACGTCCCTGTCATCTTCATCTCTTCTGGAGAATATAAGGATGATGTAACATGGAAAGCATTGGCTAACGGCTCATGTTATTTCTTGGAAGAACCAGTCCTTTTACAGGATCTTAAATATGTGTGGCAGCATGTTTATCACACACAAGTCAACTTGGCCAACAGAACTCAAGAAGAAAATTGTGCAAACGAGGTTCATGGAACTCTTGATGATAGAAAATGTATGGAAAAAGAGAAGAGAAAAAGGTTCCATATGAATTTTGACAGCAATCACCTCACTGCTTTTATGGAGGAGGAGGAAGAGGAGGATACAGAAAGAGAACAAAACTATGATGAACATCCTGAGAAAAGGCCCCGTATTGTTTGGACTCCTGAGTTGCATCAGAAGTTCTTGGATGCCATTAATGTTTTGAGTGACGGGAATAATATTCGTCCAAAAGCTATACTTGAACAGATGAATGTGCCTAACCTCACAGCTCGCCAAATTTCAAGTCATCTTCAGAAATACAGAACTCAAGAATTGATAAACCAGCAGGCTTGCATGTCTGGATTCGCTCCAATGAGAAAATTTTCAAACCTTGATATTAGATCCCAGTCTTCCTCACCATTTCAGAGCCAAAGTTATCCAGGTTTTCCTATATCAATTGCAGCCCTTAGTGGGCGCCAAAATCAAAACCAGTGTTCAATGATTTTCATTGAAACTCAAGAATCTGACATGGCACAAATGGAAGAACCCGCGCCAATTCAAGATAAATTTCCAGCAGCATTGAGCAATTATGGAAGCCAAAACCTAGAAGCTGAAGTGGGACAACCTCTACCAGATGCTTCAATGGACCAAAACCAACCCATGACAGATGGTACTTTGACTATACTTGAGGAAGATTGTGAAGAACATGACTATTCTCAAAATGGAGTACTTCCAGATCAAATTGATCAATACTGTGAGATGCTAAGGAACACTCTTCTAAGAAATAATAATAGCACTCATCTTCAAGACCCTGATGTCTGA 1278 0.3998 MEDSDFLSISSIPSFARGLKILLVHNDSLSIVSLSSMLEKYSFRVTVTDEAKAAVSMICHSEESQFNLVMAKANMPDMDTLSFLDFMLEKYVPVIFISSGEYKDDVTWKALANGSCYFLEEPVLLQDLKYVWQHVYHTQVNLANRTQEENCANEVHGTLDDRKCMEKEKRKRFHMNFDSNHLTAFMEEEEEEDTEREQNYDEHPEKRPRIVWTPELHQKFLDAINVLSDGNNIRPKAILEQMNVPNLTARQISSHLQKYRTQELINQQACMSGFAPMRKFSNLDIRSQSSSPFQSQSYPGFPISIAALSGRQNQNQCSMIFIETQESDMAQMEEPAPIQDKFPAALSNYGSQNLEAEVGQPLPDASMDQNQPMTDGTLTILEEDCEEHDYSQNGVLPDQIDQYCEMLRNTLLRNNNSTHLQDPDV 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1070 425 Gene3D - 204 264 - -
Prci5g1070 425 FunFam Two-component response regulator 203 264 - -
Prci5g1070 425 SMART REC_2 19 132 IPR001789 GO:0000160
Prci5g1070 425 ProSiteProfiles Response regulatory domain profile. 20 136 IPR001789 GO:0000160
Prci5g1070 425 MobiDBLite consensus disorder prediction 184 206 - -
Prci5g1070 425 Pfam Response regulator receiver domain 21 128 IPR001789 GO:0000160
Prci5g1070 425 SUPERFAMILY CheY-like 17 143 IPR011006 -
Prci5g1070 425 Pfam Myb-like DNA-binding domain 212 260 IPR001005 -
Prci5g1070 425 Gene3D - 19 174 - -
Prci5g1070 425 PANTHER - 11 263 - -
Prci5g1070 425 NCBIfam myb-like DNA-binding domain, SHAQKYF class 208 262 IPR006447 GO:0003677
Prci5g1070 425 SUPERFAMILY Homeodomain-like 206 261 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1070 Prci-Chr5 29452468 29459476 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1070 12 262 Response Regulator Gene Family AT1G68210 31.802 1.55e-31 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Prci5g1070 Response_reg 6.1e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1070 - - pcin:129311678 747.658