Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1069 ATGGAAGATAGTGATTTCTTATCGATTAGTTCCATTCCCAGTTTTGCTCGAGGACTTAAGATTTTGCTGGTTCATAATGATTCCTTGTCCATCGTCAGCTTGTCCTCTATGCTTGAGAAATACTCATTCAGAGCCTATGTTGGAATGAAAAATGCTCCCAAGTTAATGTCATCTACAACTCAATGGAGGCAGTCACACTCATTCAATATGACCATTTCCAAGATCACCCCTATCAAAAAGATCAGAGACTTTATCATGCAAATTTGGATCATCACATTCATTACTGTTACTGATGAGGCAAAAGCGGCTGTGTCCATGATCTGTCATTCTGAAGAAAGCCAATTCAACCTGGTAATGGCTAAAGCTAACATGCCTGACATGGATACCCTTTCATTTCTGGACTTCATGCTTGAAAAGTACGTCCCTGTCATCTTCATCTCTTCTGGAGAATATAAGGATGATGTAACATGGAAAGCATTGGCTAACGGCTCATGTTATTTCTTGGAAGAACCAGTCCTTTTACAGGATCTTAAATATGTGTGGCAGCATGTTTATCACACACAAGTCAACTTGGCCAACAGAACTCAAGAAGAAAATTGTGCAAACGAGGTTCATGGAACTCTTGATGATAGAAAATGTATGGAAAAAGAGAAGAGAAAAAGGTTCCATATGAATTTTGACAGCAATCACCTCACTGCTTTTATGGAGGAGGAGGAAGAGGAGGATACAGAAAGAGAACAAAACTATGATGAACATCCTGAGAAAAGGCCCCGTATTGTTTGGACTCCTGAGTTGCATCAGAAGTTCTTGGATGCCATTAATGTTTTGAGTGACGGGAATAATATTCGTCCAAAAGCTATACTTGAACAGATGAATGTGCCTAACCTCACAGCTCGCCAAATTTCAAGTCATCTTCAGAAATACAGAACTCAAGAATTGATAAACCAGCAGGCTTGCATGTCTGGATTCGCTCCAATGAGAAAATTTTCAAACCTTGATATTAGATCCCAGTCTTCCTCACCATTTCAGAGCCAAAGTTATCCAGGTTTTCCTATATCAATTGCAGCCCTTAGTGGGCGCCAAAATCAAAACCAGTGTTCAATGATTTTCATTGAAACTCAAGAATCTGACATGGCACAAATGGAAGAACCCGCGCCAATTCAAGATAAATTTCCAGCAGCATTGAGCAATTATGGAAGCCAAAACCTAGAAGCTGAAGTGGGACAACCTCTACCAGATGCTTCAATGGACCAAAACCAACCCATGACAGATGGTACTTTGACTATACTTGAGGAAGATTGTGAAGAACATGACTATTCTCAAAATGGAGTACTTCCAGATCAAATTGATCAATACTGTGAGATGCTAAGGAACACTCTTCTAAGAAATAATAATAGCACTCATCTTCAAGACCCTGATGTCTGA 1425 0.3972 MEDSDFLSISSIPSFARGLKILLVHNDSLSIVSLSSMLEKYSFRAYVGMKNAPKLMSSTTQWRQSHSFNMTISKITPIKKIRDFIMQIWIITFITVTDEAKAAVSMICHSEESQFNLVMAKANMPDMDTLSFLDFMLEKYVPVIFISSGEYKDDVTWKALANGSCYFLEEPVLLQDLKYVWQHVYHTQVNLANRTQEENCANEVHGTLDDRKCMEKEKRKRFHMNFDSNHLTAFMEEEEEEDTEREQNYDEHPEKRPRIVWTPELHQKFLDAINVLSDGNNIRPKAILEQMNVPNLTARQISSHLQKYRTQELINQQACMSGFAPMRKFSNLDIRSQSSSPFQSQSYPGFPISIAALSGRQNQNQCSMIFIETQESDMAQMEEPAPIQDKFPAALSNYGSQNLEAEVGQPLPDASMDQNQPMTDGTLTILEEDCEEHDYSQNGVLPDQIDQYCEMLRNTLLRNNNSTHLQDPDV 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1069 474 Pfam Myb-like DNA-binding domain 261 309 IPR001005 -
Prci5g1069 474 SUPERFAMILY CheY-like 99 192 IPR011006 -
Prci5g1069 474 MobiDBLite consensus disorder prediction 233 255 - -
Prci5g1069 474 SUPERFAMILY Homeodomain-like 255 310 IPR009057 -
Prci5g1069 474 Gene3D - 16 199 - -
Prci5g1069 474 Gene3D - 253 313 - -
Prci5g1069 474 NCBIfam myb-like DNA-binding domain, SHAQKYF class 257 311 IPR006447 GO:0003677
Prci5g1069 474 ProSiteProfiles Response regulatory domain profile. 20 185 IPR001789 GO:0000160
Prci5g1069 474 PANTHER - 96 312 - -
Prci5g1069 474 FunFam Two-component response regulator 252 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1069 Prci-Chr5 29452468 29459476 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1069 94 321 Response Regulator Gene Family AT2G25180 32.636 1.18e-25 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Prci5g1069 Myb_DNA-binding 1.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1069 - - pcin:129311678 848.966