Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1008 ATGTTCTCAAATTTGTTTTCCGTATTCGTTGTTCGTCATCTATCTACCAGTGCGAAGCTTCCGAACATTCCAAGCTCTAGGTACAAGAACTTGGCTATCCGGGAAGCCCAGAAGGCTCTCACTGAATACCTCCATGGTACAAGCTGCTTGCCTTATACTTATGCTGAGCATATTAGCAAAAGCTCTCCTCTTTCGCTCGCCAGTCTAATAACAAAGGTAGATTTTTCAGCTGTCACTTTCTCTAAAAAATTCAAGAAATTTCTTAGGTACCACCCCATCAACGAGTTTGAATTTTTCTTTGAAAGCATTGGCATAGACTATAATGACGTTTCTGGGTTGTTGCGTTCGAACAAGTTTTTCTTTTCCGAAGATCGGACTCTTCTCGATGCCGCTGGTGCGCTTTCGGAATTTGGGTTTCCGTGGAATGATTTGGGTAAGTTGTATGTGGAGAGTAGTTCCATATTTAGGAGTAATGCGGGAGAGCTCAAGTCTAAGCTATTGGAGTTCAAGAAATATGGTTTTTGTAACGTTCATGTAGTTGGTATATGTCTAGCTTTTCCTTACGTTTTGTGCGGGGAATGTGAAGTAGGTTCTGAAAGTGAAGCATTGTTAAATTTTTTGAAGTCGGTATTTTTGGATTTTGAGCTGGCAACATCTGTTGAGGAAAATGTGAATTCCTGGTACGAGGTATGTAGGAAAATTCGGGTATTTTATGATTTATGTGGTGATAAGAGAAGGCTACCGGAGCTTGTAGAGAGAAATAAAAACATCTTTCTTGAACATGGAGAAGAATTGATTCAAAAGGTTGAGTATTTTTGTAGATTTGGTGTAAACAAGGAAGAAGTAGCTGTGTTACTTCTTCAGGCCCCAGAATTGTTGAGTCTTAATTTACAGAAGCCTGTGATTAACATAACAAAGTTATTGGAATACATTGGCTTGGAGACTGAAAACCTGAAGGATGTCACTCAAAATTTTGATCATGTATTGGGGACCAACAAAATGGCTAATCTGCCTCTGGTAATGAGGGCTTTGGACTTACACCAGTGGTTCATTGATAAAATCAAGGATGGAAATCATCAGTTGCTAGTGAAATATATAGTAAGCTATCCTGATGAAGACCGAGCTGAAGAATACCGAAGTGGCTTGGAAATGATTAACGCTTCAAATACCCCAAATCATACCATGAAGAAACTAAATTTGCTTCATAGCTGGGGCTTCGGGGAAAATGCTTTAATCTTTGATCTCTTAGCACACTTGCATGGCACTAGTATTGAATTACAAGAAAGATTTGATTGCTTTCTGTGTTTAGGGATTGAACACTCCAAGCTTTGTAAGATGGTAAGAATGACCCCTAAGATTCTAAACCAAAATGCTCGATCTATAGAGCAGAAGGTAACTTTCCTCTGTCAAGGAATGGGATACTCTTTAGAGTATCTACATAGATATCCAGGTTATTTGCTTTTTGGTTTGGAGAACCGCATTAAGCCTAGGTACAGATTTCATATGTGGCTTACAGAAAAAGGTTTATGTACCAAAGACTATTCCATTGCAAGCATAGTTGCAACTAGTGAAAAGGCTTTTCTAGCTCGTGTTTACAAAATGCACCCAGCTGCTCCAAAACATTGGTTTGAGCAATTCCGGTTATGA 1647 0.391 MFSNLFSVFVVRHLSTSAKLPNIPSSRYKNLAIREAQKALTEYLHGTSCLPYTYAEHISKSSPLSLASLITKVDFSAVTFSKKFKKFLRYHPINEFEFFFESIGIDYNDVSGLLRSNKFFFSEDRTLLDAAGALSEFGFPWNDLGKLYVESSSIFRSNAGELKSKLLEFKKYGFCNVHVVGICLAFPYVLCGECEVGSESEALLNFLKSVFLDFELATSVEENVNSWYEVCRKIRVFYDLCGDKRRLPELVERNKNIFLEHGEELIQKVEYFCRFGVNKEEVAVLLLQAPELLSLNLQKPVINITKLLEYIGLETENLKDVTQNFDHVLGTNKMANLPLVMRALDLHQWFIDKIKDGNHQLLVKYIVSYPDEDRAEEYRSGLEMINASNTPNHTMKKLNLLHSWGFGENALIFDLLAHLHGTSIELQERFDCFLCLGIEHSKLCKMVRMTPKILNQNARSIEQKVTFLCQGMGYSLEYLHRYPGYLLFGLENRIKPRYRFHMWLTEKGLCTKDYSIASIVATSEKAFLARVYKMHPAAPKHWFEQFRL 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1008 548 PANTHER CGI-12 PROTEIN-RELATED 35 210 IPR003690 GO:0003690|GO:0006355
Prci5g1008 548 SMART mt_12 145 175 IPR003690 GO:0003690|GO:0006355
Prci5g1008 548 SMART mt_12 248 278 IPR003690 GO:0003690|GO:0006355
Prci5g1008 548 SMART mt_12 283 314 IPR003690 GO:0003690|GO:0006355
Prci5g1008 548 SMART mt_12 444 475 IPR003690 GO:0003690|GO:0006355
Prci5g1008 548 SMART mt_12 476 510 IPR003690 GO:0003690|GO:0006355
Prci5g1008 548 Gene3D Transcription termination factor 3, mitochondrial 70 217 IPR038538 -
Prci5g1008 548 Gene3D Transcription termination factor 3, mitochondrial 358 547 IPR038538 -
Prci5g1008 548 Gene3D Transcription termination factor 3, mitochondrial 218 354 IPR038538 -
Prci5g1008 548 Pfam mTERF 218 332 IPR003690 GO:0003690|GO:0006355
Prci5g1008 548 Pfam mTERF 425 528 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1008 Prci-Chr5 28174730 28177378 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Prci5g1008 mTERF 6.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1008 - - qsa:O6P43_026967 688.337