Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0963 ATGGCCGGCGGAGCTACCAGCGCCGTCGCCGAAGACAGAACTCCGGAGCTTATTAGTCTAGTTTATGACATTGTTGGAATGTGCGGTGGAGTTGGGGGATCCTCTTCCGCTCCTGCCATTGACGCCGATGCTGTTTTCAAGAAGGACTGCACCGATCTGGTTCGTCGGATCTCCTTACTCACGTATTTGTTTGAGGAGATTAGGGACTCGAAGAACACCGTCACTGATTCCGGAAACTTGGATGCTTCCACTTCGTCCACTGGCTCTGCATCTTCCTGGTCCTCCGATCTGGTGCTCGCTCTCCACTCAGCTAAGCGCCTTATTTCAGTCGCTAGGAACTTCCATTCTAATTCATCTTCTGATGGAGCTGCCAAGACAATTGTATTCCAATTTCAGTGTGTGACATGGAAATTGGAAAAGCTATTAAGCATCCTACCATATGATCATCTAGAAATATCAGAGGAAGTCAGAGAACAGGTGGAGTTGGTGAGAACACAATTGAGACGAGCCACTGAAAAATATGAATATATGATTTCAAAGCTGTCATCTTATGATTTATCCCGGCCAATGGCTCTGGAAATTAGCCAAAAGCTGGGTAGATCTGTGAGTGGATTGCATAAACAGCATAGCTGTCCTGATAATTTATCAGATCTAGAGAGCATTCCTAGAAGCAATGGATGGAAAAATTGCGGTACAAATCAGACTGGTCCTCACTTGGAAAGGGCACAGAGCATCCCTGCATCTTCTAAGGTTTCGTTATCAAATCTCATTGATCCTGAAGGTCAAGAAAATTCTGTGGAAAAGAATCTGACTGAAGTAAAAAAGCCTGAAACAATTCGAATTCCTGAAGATTTTCTTTGCCCTATATCATTGGAACTAATGAGGGATCCTGTTATTGTGGCTACAGGTCAGACATATGAGAGATCTTACATCCAGAGATGGATAGATGGGGGAAATACAACGTGTCCAAAAACTCAGCAGAAGCTCCAACACCTGACACTTACACCAAACTATGTGTTAAGGAGCCTTATAACTCAGTGGTGTATGGAGCATAATATTGAGCAGCCAACAGGACTTACAAATGGGAAGATAAAAAAGAGTGATGGATCTTTCAGAGATGTTACGGGTGACATGGCAGCCATTGGAGCTCTTGTCCAGAAGCTCTCTTGCCAGAACATTGAGGAGTGTAGAGCAGCTGTTGCTGAAATTCGATCACTTTCCAAACGAAGTACAGATAACAGGATACTAATTGCTGAAGCAGGAGCCATTCCAGTTCTAGTTAACCTTCTAACGTCGGAAGATGTGTTGACTCAAGAGAATGCCGTTACTTCCATTCTCAATCTCTCCATCTATGAGAACAACAAAGGACTTATAATGCTCGCTGGTGCCATTCCATCCATTGTCCAAATCCTGAGAGCTGGAAGCATGGAAGCAAGAGAAAACGCTGCGGCAACCCTCTTTAGCTTGTCACTTGCAGATGAGAACAAGATAATTATTGGTGCCTCAGGAGCTATCCTTGCTTTGGTAGAATTGCTCCAGAATGGGAGCCCTAGAGGGAAGAAGGATGCTGCAACAGCGTTATTCAACTTATGCATATATCAAGGAAACAAGGGCAGGGCCATAAGAGCAGGGATCATTACAGCATTGTTGAAGATGCTTACAGATTCAAGCAAATCGATGGTCGATGAAGCCTTGACAATAATGTCAGTTCTTGCCAGCCACCAAGAAGCAAAGGTTGCTATTGTAAAGGCCAGCACTATACCTGTTCTGATTGATCTTTTGAGGACAGGATTGCCTCGAAACAAAGAGAACGCGGCTGCCATTTTACTTGCCTTGTGTAAGAGGGATCCTGAAAATCTGGCTTGTATAAGCAGACTTGGTGCTGTTATACCTTTGACAGAACTTGCTCGGAGCGGCACAGAGAGGGCTAAAAGGAAGGCTACTTCACTATTGGAGCATCTGAGAAAGTTACAACATATTTGA 1983 0.4433 MAGGATSAVAEDRTPELISLVYDIVGMCGGVGGSSSAPAIDADAVFKKDCTDLVRRISLLTYLFEEIRDSKNTVTDSGNLDASTSSTGSASSWSSDLVLALHSAKRLISVARNFHSNSSSDGAAKTIVFQFQCVTWKLEKLLSILPYDHLEISEEVREQVELVRTQLRRATEKYEYMISKLSSYDLSRPMALEISQKLGRSVSGLHKQHSCPDNLSDLESIPRSNGWKNCGTNQTGPHLERAQSIPASSKVSLSNLIDPEGQENSVEKNLTEVKKPETIRIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDGGNTTCPKTQQKLQHLTLTPNYVLRSLITQWCMEHNIEQPTGLTNGKIKKSDGSFRDVTGDMAAIGALVQKLSCQNIEECRAAVAEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQENAVTSILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLADENKIIIGASGAILALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKVAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDPENLACISRLGAVIPLTELARSGTERAKRKATSLLEHLRKLQHI 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0963 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 544 586 IPR000225 GO:0005515
Prci5g0963 660 FunFam RING-type E3 ubiquitin transferase 560 659 - -
Prci5g0963 660 FunFam RING-type E3 ubiquitin transferase 280 355 - -
Prci5g0963 660 Coils Coil 153 173 - -
Prci5g0963 660 Gene3D - 457 559 IPR011989 -
Prci5g0963 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 421 463 IPR000225 GO:0005515
Prci5g0963 660 PANTHER U BOX DOMAIN-CONTAINING 47 655 - -
Prci5g0963 660 SMART arm_5 451 491 IPR000225 GO:0005515
Prci5g0963 660 SMART arm_5 533 573 IPR000225 GO:0005515
Prci5g0963 660 SMART arm_5 574 614 IPR000225 GO:0005515
Prci5g0963 660 SMART arm_5 616 656 IPR000225 GO:0005515
Prci5g0963 660 SMART arm_5 492 532 IPR000225 GO:0005515
Prci5g0963 660 SMART arm_5 410 450 IPR000225 GO:0005515
Prci5g0963 660 Gene3D - 560 659 IPR011989 -
Prci5g0963 660 Gene3D - 363 456 IPR011989 -
Prci5g0963 660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 359 IPR013083 -
Prci5g0963 660 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Prci5g0963 660 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Prci5g0963 660 SUPERFAMILY ARM repeat 380 654 IPR016024 -
Prci5g0963 660 Pfam Armadillo/beta-catenin-like repeat 493 531 IPR000225 GO:0005515
Prci5g0963 660 Pfam Armadillo/beta-catenin-like repeat 411 449 IPR000225 GO:0005515
Prci5g0963 660 CDD RING-Ubox_PUB 282 334 IPR045210 -
Prci5g0963 660 FunFam RING-type E3 ubiquitin transferase 359 559 - -
Prci5g0963 660 SUPERFAMILY RING/U-box 278 355 - -
Prci5g0963 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 462 504 IPR000225 GO:0005515
Prci5g0963 660 Pfam U-box domain 281 352 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0963 Prci-Chr5 27068121 27071403 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0963 1 656 U-box Gene Family AT1G23030 61.398 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0963 - - gmx:100815448 994.571