Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0911 ATGTCTTGTTCGTCGTCTTCACCAAGATCGCTTGTCTCTATGGGCTCAGAAAGTTCTATCACCACACTTCAACAGCGTCTTCAGTTCATTTTGCACAGCCGTGCTGAGTGGTGGGTGTACATCATCTTCTGGCAAGCTTGGAAAGACGACGACGGAAGTTGCAGTCCTCGCCGCCAGGTACTCAATTGGGGGGACGGCCACTTCCGTGGAACCAGAGAGTCGTCCACGTCCAAGCCCAAGCAAAACACGAGTGATGATCAATGGCGAAGCCCTAATAATCGGGCGCGAAAGATGAGGTTGATTCAAACCCACATGGAAGGTGAAGGACACGTGACTGAGTTGGAATGGTTTTACACTGGATCGTTGACACGATCGTTCGCCGCCGGGGAAGACGTGGTTGGGCGTGCCTTCAGCTCAGCCACACATGTTTGGTTGGCTGGCGGCGGCCACGGCGGAGATTTGCAGTTCCACGAGTGTGAAAGAGTTCGAGAAGCTCTTGCTCATGGGATCCAAACTTTGGTGTGCATTCCCATTCCTAATGCACTTGGCGTGCTTGAGCTTGCCTCCACTGACTTAATAATTCAAGATTGGAGCCTCATTCAATTGGCACAATCAGTTTTCGACTGTGACAACAACAACATCATCATCAACCCCATAAATCCACCAGATCCTTTTGTTTCTTCCTCCCCCAAGCAGCAGCCTCGCGCCATCAGAAAAAAGCAGGGAAGAAATGATGACGACGACGACGACGATACAGTGAAACCACAAGATCAGTTACTAACGCCTCTAAACCACGTTGAGGCTGAGAGACAGAGAAGAGAGAGACTGAATCAAAGATTCTATGCTCTCCGTTCTGTTGTCCCTAATGTGTCCAAAATGGACAAAGCTTCTCTGCTATCAGATGCAGTCACGTACATCAATCAACTCAAGGCCAAAATTGAAGAACTAGAGGCCAAATTCAAGAAAACGGAACAGGAAGAAGAAGCTGCCACAAAGCGCTATCATTGTTCGAGTTCTGAAGCGAGTGCGGTTGGAATCGAAGTCAATATAGTGGGAACGGAGGCGATGATAAGGGTTCAGAGCCTGGATGTGAATCACCCAGCTGCAAGATTAATGGATGCTCTGAGACAACTTGATTTTCATGTTCATCATGCCAGCATGTCAAGAGTCAATGACCTGATTCTGCAAGACGTCGTCGTCAGGGTTCCCAATAATTTCATGACTGCCCAGGCCATGAAAAATGCCATTCTACAACGTTTACAGAACTGA 1269 0.4846 MSCSSSSPRSLVSMGSESSITTLQQRLQFILHSRAEWWVYIIFWQAWKDDDGSCSPRRQVLNWGDGHFRGTRESSTSKPKQNTSDDQWRSPNNRARKMRLIQTHMEGEGHVTELEWFYTGSLTRSFAAGEDVVGRAFSSATHVWLAGGGHGGDLQFHECERVREALAHGIQTLVCIPIPNALGVLELASTDLIIQDWSLIQLAQSVFDCDNNNIIINPINPPDPFVSSSPKQQPRAIRKKQGRNDDDDDDDTVKPQDQLLTPLNHVEAERQRRERLNQRFYALRSVVPNVSKMDKASLLSDAVTYINQLKAKIEELEAKFKKTEQEEEAATKRYHCSSSEASAVGIEVNIVGTEAMIRVQSLDVNHPAARLMDALRQLDFHVHHASMSRVNDLILQDVVVRVPNNFMTAQAMKNAILQRLQN 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0911 422 Coils Coil 299 333 - -
Prci5g0911 422 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 23 207 IPR025610 -
Prci5g0911 422 PANTHER MYC 18 419 IPR045084 GO:0003700|GO:0006355
Prci5g0911 422 SMART finulus 266 315 IPR011598 GO:0046983
Prci5g0911 422 MobiDBLite consensus disorder prediction 75 89 - -
Prci5g0911 422 Pfam Helix-loop-helix DNA-binding domain 264 310 IPR011598 GO:0046983
Prci5g0911 422 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 263 333 IPR036638 GO:0046983
Prci5g0911 422 MobiDBLite consensus disorder prediction 220 258 - -
Prci5g0911 422 MobiDBLite consensus disorder prediction 65 93 - -
Prci5g0911 422 Gene3D - 257 327 IPR036638 GO:0046983
Prci5g0911 422 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 260 309 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0911 Prci-Chr5 25130154 25131481 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0911 5 420 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 37.071 1.39e-67 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci5g0911 bHLH-MYC_N 4.1e-41 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0911 - K13422 pcin:129310791 810.446