Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0877 ATGACAACTCGAATAGCACCTGGTGTCGGAGCAAACTTGCTGGGTCAACACTCTGCAGAGAGGAATCAAGATGCTACCGCTTATGTTGGCAATCTCGATCCCCAGGTAACTGAGGAGTTATTATGGGAGCTATTTGTTCAGGCAGGTCCAGTTGTTAATGTCTATGTTCCCAAAGACAGAGTGACTAACCAACATCAAGGTTATGGTTTTGTTGAATTCCGGAGTGAAGAAGATGCTGACTATGCCATCAAGGTGCTTAATATGATTAAGCTTTATGGAAAACCAATACGTGTAAATAAGGCTTCCCAAGATAAAAAGAGCTTGGATGTGGGAGCAAACCTTTTTATTGGAAACCTTGATCCTGATGTGGATGAGAAACTCTTGTATGACACATTCAGTGCCTTTGGAGTGATTGTTACAAATCCCAAGATCATGAGAGATCCTGAAACTGGAAATTCCCGTGGATTTGGCTTCATTAGCTATGATTCATTTGAGGCATCGGATTCAGCCATTGAGGCAATGAATGGGCAATATCTTTGCAATCGTCAAATAACAGTATCTTATGCTTACAAGAAAGACACCAAAGGGGAGAGGCATGGCACTCCAGCAGAAAGAGTTTTGGCTGCCAGCAACCCAACTGCCCAGAAGAGCAGGCCTCACACTTTGTTTGCCAGCGGACCTCCAACACTTCCCAATGTTCCTCAGGCTAATGGTGCCATTGCTGCACCTGTGCCTCCTCGTCCCTATGCTAATGGTGTCGCTCCCCCTGTTATTCCCACCCTTCGACCTCCACCTTCGCAAGCTTCACCATTTCCACCTATGCCAGTAGCCCCTCAACCACCATGGCATCAACAACAACCAGGTCAGACAATGCCACCACCTGGGATGCCTTCTCCTGTCCAGCAGTTCAGGCCACCTCACTCGAATATGCCACCCCCTCCACCTCCGCAAGCAGTGCCTGCTCCCCCAAGGCCTCTTCCACCACCAGCTGCAATGACAGGCCAACAACCTGTTTGGCGGCCACCACCACCCCCTCCACCTCAGCAACAGGGTCTGCGGCCCCCTCCATTTCCTCAATCCTCCATGCCACCACCACCACCTCCAAATTGA 1110 0.4937 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPTLPNVPQANGAIAAPVPPRPYANGVAPPVIPTLRPPPSQASPFPPMPVAPQPPWHQQQPGQTMPPPGMPSPVQQFRPPHSNMPPPPPPQAVPAPPRPLPPPAAMTGQQPVWRPPPPPPPQQQGLRPPPFPQSSMPPPPPPN 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0877 369 Gene3D - 16 111 IPR012677 -
Prci5g0877 369 SMART rrm1_1 26 99 IPR000504 GO:0003723
Prci5g0877 369 SMART rrm1_1 113 187 IPR000504 GO:0003723
Prci5g0877 369 CDD RRM1_SF3B4 28 100 IPR034158 -
Prci5g0877 369 CDD RRM2_SF3B4 111 193 IPR034159 -
Prci5g0877 369 MobiDBLite consensus disorder prediction 248 369 - -
Prci5g0877 369 PRINTS Proline rich extensin signature 212 228 - -
Prci5g0877 369 PRINTS Proline rich extensin signature 289 306 - -
Prci5g0877 369 PRINTS Proline rich extensin signature 316 341 - -
Prci5g0877 369 PRINTS Proline rich extensin signature 265 281 - -
Prci5g0877 369 PRINTS Proline rich extensin signature 243 264 - -
Prci5g0877 369 PANTHER SPLICING FACTOR 3B SUBUNIT 4 14 364 - -
Prci5g0877 369 MobiDBLite consensus disorder prediction 193 369 - -
Prci5g0877 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Prci5g0877 369 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Prci5g0877 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Prci5g0877 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Prci5g0877 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Prci5g0877 369 Gene3D - 112 200 IPR012677 -
Prci5g0877 369 FunFam splicing factor 3B subunit 4 109 200 - -
Prci5g0877 369 MobiDBLite consensus disorder prediction 208 232 - -
Prci5g0877 369 FunFam Splicing factor 3b subunit 4 16 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0877 Prci-Chr5 24113544 24124358 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0877 18 198 Eukaryotic Initiation Factors Gene Family AT4G34110 29.798 4.09e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0877 K12831 - gmx:100791039 545.428