Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0817 ATGGGTCACCATACTTGCTGCAATCAACAGAAAGTTAAAAGAGGGCTTTGGTCTCCCGATGAAGACGAAAAACTCATTCGATACATTTCCACTCATGGCTATGGCTGCTGGAGGCTTCAAAGGTGTGGCAAGAGTTGTCGATTGAGATGGATTAATTACTTGAGGCCTGATATTAGAAGAGGCAGATTTAGTCCTGATGAAGAAAAGCTTATTATAAGCCTGCATGGGGTCGTAGGCAACAGATGGGCTCACATAGCTAGCCACTTGCCCGGCAGAACTGACAATGAAATAAAGAATTATTGGAATTCGTGGATCAAAAAGAAAATAAGAAAGCCTTCGTCTTCAACCACTACTACTACGCAAATTGTGAATGATCATCATCATAATCCCCAATTCAGTCATAATAGTAATAATAATAATCCCAATGATCAACTTCACTTTAACTACACCACCCAAGATCATGACCTACTCACCTCAAAACGGCCAATTCAAGATGCCTTATTTTCTCCCACCTGTCCCTTGTTCATGTTCGACACCAGTACTTCACTGCATCATGGGATTACAACAACAACCTCAGACATAGTCAACAACAACAATGGTACAGTAGCAGCAGCAGCAGAAGTGTTCCAAGATGGTACTGTAAGTTTGATGAGCTCTGGGAGTTGGAATTTGAGTCAACATCATCTTGTTCTTCGTCATTCTTCTGCGACGACAACTTTTACAGGCGTGGACAGTGCTGCTACGACAAATACCAATTATAGTTTTCCACCTTTGATAAAGAACATGGCCAATGATAATCATGTGCAAATAGAATCATGTTGTATAGAGGAAGAAGGAGATATAGCAGCTATGGAGTGTTTGAGGAGGCAAGATGATCAGTTGAATAACATTGATTGGGTGGAGACGACAGGCCAACAACAATGTCCTAACTTCTTGTTTTGGGACAATCTTGGTGGGGATGAAATTATGGCGCCAGGTTCATCATCATCAAATCCGCTTTCTTCTTTTCCATCGTCCTGA 1020 0.4157 MGHHTCCNQQKVKRGLWSPDEDEKLIRYISTHGYGCWRLQRCGKSCRLRWINYLRPDIRRGRFSPDEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSSSTTTTTQIVNDHHHNPQFSHNSNNNNPNDQLHFNYTTQDHDLLTSKRPIQDALFSPTCPLFMFDTSTSLHHGITTTTSDIVNNNNGTVAAAAEVFQDGTVSLMSSGSWNLSQHHLVLRHSSATTTFTGVDSAATTNTNYSFPPLIKNMANDNHVQIESCCIEEEGDIAAMECLRRQDDQLNNIDWVETTGQQQCPNFLFWDNLGGDEIMAPGSSSSNPLSSFPSS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0817 339 PANTHER MYB DOMAIN PROTEIN 55 1 263 - -
Prci5g0817 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Prci5g0817 339 ProSiteProfiles Myb-like domain profile. 9 54 IPR001005 -
Prci5g0817 339 Gene3D - 5 59 - -
Prci5g0817 339 MobiDBLite consensus disorder prediction 112 147 - -
Prci5g0817 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 54 IPR017930 -
Prci5g0817 339 Gene3D - 61 140 - -
Prci5g0817 339 FunFam Transcription factor MYB26 61 132 - -
Prci5g0817 339 Pfam Myb-like DNA-binding domain 60 104 IPR001005 -
Prci5g0817 339 Pfam Myb-like DNA-binding domain 14 54 IPR001005 -
Prci5g0817 339 CDD SANT 62 105 IPR001005 -
Prci5g0817 339 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Prci5g0817 339 SMART sant 59 107 IPR001005 -
Prci5g0817 339 SMART sant 13 56 IPR001005 -
Prci5g0817 339 SUPERFAMILY Homeodomain-like 11 101 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0817 Prci-Chr5 21528334 21530829 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0817 1 328 MYB Transcription Factor Family AT1G63910 47.606 2.53e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci5g0817 Myb_DNA-binding 1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0817 K09422 K02947 gmx:100797787 356.295