Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0816 ATGGGTCACCATACTTGCTGCAATCAACAGAAAGTTAAAAGAGGGCTTTGGTCTCCCGATGAAGACGAAAAACTCATTCGATACATTTCCACTCATGGCTATGGCTGCTGGAGTGAGGTTCCAGAGAAAGCTGGGCTTCAAAGGTGTGGCAAGAGTTGTCGATTGAGATGGATTAATTACTTGAGGCCTGATATTAGAAGAGGCAGATTTAGTCCTGATGAAGAAAAGCTTATTATAAGCCTGCATGGGGTCGTAGGCAACAGATGGGCTCACATAGCTAGCCACTTGCCCGGCAGAACTGACAATGAAATAAAGAATTATTGGAATTCGTGGATCAAAAAGAAAATAAGAAAGCCTTCGTCTTCAACCACTACTACTACGCAAATTGTGAATGATCATCATCATAATCCCCAATTCAGTCATAATAGTAATAATAATAATCCCAATGATCAACTTCACTTTAACTACACCACCCAAGATCATGACCTACTCACCTCAAAACGGCCAATTCAAGATGCCTTATTTTCTCCCACCTGTCCCTTGTTCATGTTCGACACCAGTACTTCACTGCATCATGGGATTACAACAACAACCTCAGACATAGTCAACAACAACAATGGTACAGTAGCAGCAGCAGCAGAAGTGTTCCAAGATGGTACTGTAAGTTTGATGAGCTCTGGGAGTTGGAATTTGAGTCAACATCATCTTGTTCTTCGTCATTCTTCTGCGACGACAACTTTTACAGGCGTGGACAGTGCTGCTACGACAAATACCAATTATAGTTTTCCACCTTTGATAAAGAACATGGCCAATGATAATCATGTGCAAATAGAATCATGTTGTATAGAGGAAGAAGGAGATATAGCAGCTATGGAGTGTTTGAGGAGGCAAGATGATCAGTTGAATAACATTGATTGGGTGGAGACGACAGGCCAACAACAATGTCCTAACTTCTTGTTTTGGGACAATCTTGGTGGGGATGAAATTATGGCGCCAGGTTCATCATCATCAAATCCGCTTTCTTCTTTTCCATCGTCCTGA 1041 0.4179 MGHHTCCNQQKVKRGLWSPDEDEKLIRYISTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFSPDEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSSSTTTTTQIVNDHHHNPQFSHNSNNNNPNDQLHFNYTTQDHDLLTSKRPIQDALFSPTCPLFMFDTSTSLHHGITTTTSDIVNNNNGTVAAAAEVFQDGTVSLMSSGSWNLSQHHLVLRHSSATTTFTGVDSAATTNTNYSFPPLIKNMANDNHVQIESCCIEEEGDIAAMECLRRQDDQLNNIDWVETTGQQQCPNFLFWDNLGGDEIMAPGSSSSNPLSSFPSS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0816 346 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci5g0816 346 CDD SANT 69 112 IPR001005 -
Prci5g0816 346 Gene3D - 5 66 - -
Prci5g0816 346 PANTHER MYB DOMAIN PROTEIN 55 1 270 - -
Prci5g0816 346 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci5g0816 346 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Prci5g0816 346 Gene3D - 69 148 - -
Prci5g0816 346 MobiDBLite consensus disorder prediction 119 154 - -
Prci5g0816 346 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Prci5g0816 346 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci5g0816 346 CDD SANT 17 61 IPR001005 -
Prci5g0816 346 FunFam Transcription factor MYB26 68 139 - -
Prci5g0816 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Prci5g0816 346 SMART sant 13 63 IPR001005 -
Prci5g0816 346 SMART sant 66 114 IPR001005 -
Prci5g0816 346 FunFam MYB transcription factor 6 66 - -
Prci5g0816 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0816 Prci-Chr5 21528334 21530829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0816 1 335 MYB Transcription Factor Family AT1G63910 49.577 1.94e-99 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci5g0816 Myb_DNA-binding 8.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0816 K09422 K02947 gmx:100797787 379.022