Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0802 ATGGGATTTCCGGTGAGTTGCGCCGAGCTCGTTTTCCCGAAGCTTCTCATCCAGATCCTTGCCGTATTTGGATTCCTCAGAACAATCACATCGTTCCTCCTTCGCTCCGTGGGCCTCCCCGATTTTCTCGAACCGGACATTCATTACTTCTGGGATTCTCAAGAGAACGCGTATTTTTACCCTACCCGAGTGCCCGAATTCGAGTCGGCGAGCTCGGTCCTGATCCGAGAGATGCTGCCGGTGGTGAAGTTCTCGGAGCTTGAGGCGGCGCCGGAGAGCTGCTGCGCCGTGTGTCTGTACGAATTCGACGGCGACGATGAGATCCGACAGCTCACAAACTGCACGCACGTATTCCACCGAGGATGTCTAGATCGTTGGATGGGATACGATCGGAGAACGTGTCCGTTGTGTCGAGCACCGTTCACACCTCACCATATGCAAGCAGCTTTTAATCACTCTCTCTGGGCTGCTTCTGGTATACCTGAATTTTACCCAGAATCTGATTCTGAATTATTATTATGA 522 0.523 MGFPVSCAELVFPKLLIQILAVFGFLRTITSFLLRSVGLPDFLEPDIHYFWDSQENAYFYPTRVPEFESASSVLIREMLPVVKFSELEAAPESCCAVCLYEFDGDDEIRQLTNCTHVFHRGCLDRWMGYDRRTCPLCRAPFTPHHMQAAFNHSLWAASGIPEFYPESDSELLL 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0802 173 ProSiteProfiles Zinc finger RING-type profile. 95 138 IPR001841 -
Prci5g0802 173 SMART ring_2 95 137 IPR001841 -
Prci5g0802 173 CDD RING-H2_RHA1-like 92 141 - -
Prci5g0802 173 PANTHER RING ZINC FINGER PROTEIN-RELATED 38 157 - -
Prci5g0802 173 SUPERFAMILY RING/U-box 77 145 - -
Prci5g0802 173 Pfam Ring finger domain 95 138 IPR001841 -
Prci5g0802 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 147 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0802 Prci-Chr5 19713915 19714744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0802 1 159 C3H Transcription Factor Family AT1G63840 47.826 6.76e-53 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0802 K16281 - gmx:102665617 216.853