Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0768 ATGGTGCTAGAGAACATGAAGAAACAACTTGCTTTGGCTGTGAGGAGCATCCAGTGGAGCTATGCAATATTCTGGTCTGCTTCTAGTTGCCAACCCGGGGTTTTGGAATGGGGTGAGGGATATTACAATGGCGACATAAAGACTCGGAAAACAAGTCAGGCAGTACAACTTAGGTCTGATCAAATAGGTTTGCAGAGGAGTGAACAGTTGAGAGAGCTATTTGAGTCCCTCGCAACTGCAGAATCGACACAACAAACAAAAGGGCCTTCAACTGCGCTAAGCCCTGAGGATCTCACAGATACTGAGTGGTATTACTTGGTTTGCATGTCCTTTGTGTTCAATATTGGCCAAGGATTACCTGGACGAACTCTGGCAAATGACCAACCTATTTGGGTTTACAATGCCCCTTTTGGTGATAGTAGAATTTTCAGTCGCTCTCTGCTTGCAAAGAGTGCATCAATTCAGACGGTGGCATGCTTCCCATTTCTGGAAGGTGTAGTTGAGCTCGGGACAAGTGATCTGATCTCAGAAGACCTCAGTCTCATTCAACGTATAAAAACTTCTTTCTTGGATGTTCTGGGTGCCAGTAAGTCTGGATCTGCATTTAAAACAAGAAATAAGAAAGATATTACTTCTGCAGCATTTGGCCACAGTGCTTATTATGCCAAATTACCAGAAGTGGGATCTGCTGTAAACAATAAAACTTCTCCCAATAGTTTGAGTGCGATTGAAGCAAACCAACTGGCAGATGAGACACACGTGGTTGAAAGAGTAGATGGTGGTTCTTCTTTGGTCCATAGCTGGCAAGTTAGGGATGACGAATTTTGTAACGATGCCCATAACTCCATGATTTCTAGTGACTGTAGTTCTCAAACTCTGGCTGATCCTGAAAAGATAGCCTGTTGTCCTAAGGATCAAAACCCAACTGACCATTCTGTGCTAGACCACCAGGAGTGCAATAAAACGAAAATGACCTTAAAGAATTGTCGAAATGATGGTTGGCATTATCGAAAAGTTCTCTCTGCGGTTCTAAAAGACTCAGACCAGTCTGTAATTAGAGCACATTTTCAAAGTAGTAATAAGGAATCCAGCTTTGTTAGTTACAAGAAAGGAGGGTCAATGAGTTATCAAATGCTAAAAGGAGGAACCCCACAGAAGTTGTTGAAAAAGGTATTGCTTGAAGTTCCTCGGATGCATATGGATGGGCTTCTTGAGTGTCAAGAAGAAAATGATTACAAAGAGCAAATGAGACCAGAGGTTGATGAAATTGGTATGAACCATGTATTGTCAGAAAGAAGGAGAAGGGCAAAACTAAATGAAAGGTTTCTAACACTTAGATCAATGGTTCCTTCAGTTAGTAAGGATGACAAAGTTTCAATACTGGACGAGGCAATTGAATACCTCAGAAAGCTTGAGAAGAAGATTAGAGAGTTGGAAGCATGTAGGGAGCTAATAGATTTAGAAACCAGAGCTAAAAGAACACCTCAAGATATGGTAGAGAGGACTTCTGATAATTATTTTAACAAAACTGATAATGGCATGAAGCCAATGCATAACAAGAGAAAGGCATGTGACGTTAAAGAAACATGGCAAGAAAATGATTCAGTTGCCCTAAATGACAGCTCTACTAGTAGCGTCATTATCAATATGAGCAACACCGAAGTTCTGATTGAAATGAAACATCCATGGAGAGAAGGAGCAGTGATGAAAATTATGGAAGCACTTAGGAATCTCCACTTGGATTTACGATCAATTCAGTCATCAGAAGTTGGTGGGATTCTTCATCTAACCATTAGATCTCAGATGAGAGGGCCAACTATTGCATCAGCGAAGAAGATAAAACAAGTGCTGCAAAAAGCGGCTTGGAACTGTTGA 1875 0.4117 MVLENMKKQLALAVRSIQWSYAIFWSASSCQPGVLEWGEGYYNGDIKTRKTSQAVQLRSDQIGLQRSEQLRELFESLATAESTQQTKGPSTALSPEDLTDTEWYYLVCMSFVFNIGQGLPGRTLANDQPIWVYNAPFGDSRIFSRSLLAKSASIQTVACFPFLEGVVELGTSDLISEDLSLIQRIKTSFLDVLGASKSGSAFKTRNKKDITSAAFGHSAYYAKLPEVGSAVNNKTSPNSLSAIEANQLADETHVVERVDGGSSLVHSWQVRDDEFCNDAHNSMISSDCSSQTLADPEKIACCPKDQNPTDHSVLDHQECNKTKMTLKNCRNDGWHYRKVLSAVLKDSDQSVIRAHFQSSNKESSFVSYKKGGSMSYQMLKGGTPQKLLKKVLLEVPRMHMDGLLECQEENDYKEQMRPEVDEIGMNHVLSERRRRAKLNERFLTLRSMVPSVSKDDKVSILDEAIEYLRKLEKKIRELEACRELIDLETRAKRTPQDMVERTSDNYFNKTDNGMKPMHNKRKACDVKETWQENDSVALNDSSTSSVIINMSNTEVLIEMKHPWREGAVMKIMEALRNLHLDLRSIQSSEVGGILHLTIRSQMRGPTIASAKKIKQVLQKAAWNC 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0768 624 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 6 189 IPR025610 -
Prci5g0768 624 Gene3D - 425 495 IPR036638 GO:0046983
Prci5g0768 624 Pfam Helix-loop-helix DNA-binding domain 426 472 IPR011598 GO:0046983
Prci5g0768 624 SMART finulus 428 477 IPR011598 GO:0046983
Prci5g0768 624 Coils Coil 461 488 - -
Prci5g0768 624 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Prci5g0768 624 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 422 471 IPR011598 GO:0046983
Prci5g0768 624 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 425 487 IPR036638 GO:0046983
Prci5g0768 624 PANTHER TRANSCRIPTION FACTOR TT8 4 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0768 Prci-Chr5 18679171 18685393 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0768 2 624 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 43.817 1.15e-166 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci5g0768 bHLH-MYC_N 1.5e-49 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0768 - - gmx:100808167 749.199