Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0722 ATGAGGCACTCAGGAGCATATTCAGGGCTAAAGACGGGGCCTCACGCGCTGCCGTTAGCGAGGATCAAGAAGATAATGAAGAAATCTGGGGATGAAGTGAAGATGGTTTCTGGTGAGGCTCCCATTGCTTTCGCTAAAGCTTGTGAGCTCTTCATTGAGGAACTCACCCGAAGGTCATGGATCGTCACCACTCACTCCAAGAGGAGAACCCTCCTCAAAGATGACGTCGCTTCCGCCGTCATCGCCACCGATCTTTTTGACTTCTTGATCTCTTTGTTCACCCGCCGCCATGACTCTACAGCCTTTCCCTCTACCACCGCCGTAGAATCTTAA 333 0.5135 MRHSGAYSGLKTGPHALPLARIKKIMKKSGDEVKMVSGEAPIAFAKACELFIEELTRRSWIVTTHSKRRTLLKDDVASAVIATDLFDFLISLFTRRHDSTAFPSTTAVES 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0722 110 FunFam Nuclear transcription factor Y subunit C 1 95 - -
Prci5g0722 110 SUPERFAMILY Histone-fold 13 89 IPR009072 GO:0046982
Prci5g0722 110 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 17 80 IPR003958 -
Prci5g0722 110 Gene3D Histone, subunit A 6 95 IPR009072 GO:0046982
Prci5g0722 110 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 15 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0722 Prci-Chr5 14196631 14196963 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0722 15 96 CCAAT-HAP5 Transcription Factor Family AT1G54830 60.976 9.38e-31 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Prci5g0722 CBFD_NFYB_HMF 2.2e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0722 - - adu:107462326 154.066