Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0719 ATGTCGTTCATTGGAACCCAACAAAAATGCAAGGCTTGTGATAAAACTGCTCATTTTGTGGATTCTGTTTCAGTAGATGGAATTATTTATCACAAGACTTGCTTTAAATGTAGTCAGTGCAATGGTGTCCTTGCGATAAGCACGTACTCGTCGGTGGATGGAGTGTTGTACTGCAAGCCTCATTTTGAACAGCTTTTAAGAGCACTGGGGGTCTCACCAGGAGATCCCTATCAAGTGAGTTCTGGAAAGAGTGAATTGACAAGGGCACCAAGCAAATTGTCAGCTACGTTCTCAGGAACCTTGGACAAATGCTCTTCTTGCAAGAAAACTGTTTACCCACTTGAAAGGTTTGTGATTATGGAAGGAGAATTCTATCACAAGTCTTGCTTTAGGTGTGCTCAAGGAGGATGTTTTTTGAGCCCATCAAACTATGCATCACTTGATGGGTTTCTTTATTGTAAGCACCATTTTGCTCAGTTGTTCAAGGAAAAAGGGTGCTATTCCTATGTGTCCAAAGCTTCTTCCATGAAGAAGAATGAATCTCAAAAGCTTGAACTTGCTTCATCTGTCGATTTTGAGGCACTTCCTACACTAAACCATGTTGATGAGGAACAACAAGTAGCCAAGTAG 630 0.4127 MSFIGTQQKCKACDKTAHFVDSVSVDGIIYHKTCFKCSQCNGVLAISTYSSVDGVLYCKPHFEQLLRALGVSPGDPYQVSSGKSELTRAPSKLSATFSGTLDKCSSCKKTVYPLERFVIMEGEFYHKSCFRCAQGGCFLSPSNYASLDGFLYCKHHFAQLFKEKGCYSYVSKASSMKKNESQKLELASSVDFEALPTLNHVDEEQQVAK 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0719 209 FunFam LIM domain and actin-binding 1 98 169 - -
Prci5g0719 209 ProSiteProfiles LIM domain profile. 102 163 IPR001781 -
Prci5g0719 209 SMART lim_4 103 156 IPR001781 -
Prci5g0719 209 SMART lim_4 9 61 IPR001781 -
Prci5g0719 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Prci5g0719 209 Gene3D Cysteine Rich Protein 2 67 - -
Prci5g0719 209 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Prci5g0719 209 Pfam LIM domain 10 64 IPR001781 -
Prci5g0719 209 Pfam LIM domain 104 160 IPR001781 -
Prci5g0719 209 Gene3D Cysteine Rich Protein 100 169 - -
Prci5g0719 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 131 169 - -
Prci5g0719 209 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Prci5g0719 209 FunFam LIM domain and actin-binding 1 4 72 - -
Prci5g0719 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 97 130 - -
Prci5g0719 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 71 - -
Prci5g0719 209 PANTHER OS06G0237300 PROTEIN 92 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0719 Prci-Chr5 13339377 13342181 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Prci5g0719 LIM 9.3e-12 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0719 - K24413 tpra:123915974 271.552