Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0712 ATGGCTGCAACATTTAATTGCATTCGTTCCATTAATCAATCTCGTGAGGATTGGAAGATCAAAGTATGCATTGTTCGATTGTGGTCTATTGCTCCTCATGCTGTTTCAAACGAGCCTACATCACTTGAGATGGTTTTGCAGGATGAAGCTGGTGATCGAATTGGAGCTTTTGTTAGGAAAGGAGTTGCTCGTCACCATTCTCGATTTCTTCGTGAAGGTCGTGCCTTTATTCTCATGCAATTTGGTGTTGTTGAGAATTCTGGATCATACAGGACCACACACCATGCTTTTAAAGTGATGTTTCAATATTCGACTACTGTGCGACCTGTGGTGGATAACAATAAGATCCATTCTCATGGCTTCTACTTTACCCCATTTAGTGATATCATATGCGGTGATTCAAGGGAGGAATATTTAGTTGATATCATAGGGAGACTTGCTGCAGTTGGGGAGATTCAAAAAGTTGTTGTCAATGGACGACAGGAGCAAAGGCTTGATATATTATTGGATGATGATAAGAGAAATTACCTTGAAGTTACTTTATGGGGTGCCCTTGCCAATGATGTTCTTCGCTATATGAAAGGCCCCACACATTGTCCCATCATTGTGATTGTCCAGTGGTGCAAGATACGAGTTTTCAAGGGGATTAAGAAAGTTTCCAACTCTCTTTTCGCTTCCCATTTGTTCATCCATCCTACCATGGATGAAGTCAGCACCTTTGTTGAAAGTGTTGACACCGAGCGGGGATGGTATTATATCGGCTGCCAAAAGTGTGCAAAAAAGGTTCTTCCTGATGGCGATGGTTTTTACTGTGACAAGTGTAATGAGTTCGTCAAGTCTGTGTCTCTAAGGTTTCGTGTGTGGTGTCGTGTTTATGATGCATCTAGCTCAACTGATGTTCTTATCTTTGACAAGGAATTTGCTGCCTTCATAAAATGCTCTGCTGCTGAACTAAAAGAAATGGATGTAACTGGTGTATGTGAAGGTAATGGCTTTGATAAGATAATAGGGAAAAAGTTCCTTTTCCGTGTTAGAATTTTAGAGGATTATGCTAAGGGCCTCCCTTGTGGCATTATAGTAAATGGAATGACTGATGATGAAAACACTGTGAAGAGTTTTCTAGATGAATGGGATCAACAAGCGCCTTCACCTAAATGTGTAGCACAAACACCCTCAATTGAGAAAAATGAATCTACTGAAGATAGTTCCTCAACCATTACTCCATCAGAAGTTATTGAAGTTGGATCTGCCAATGGTGATGAGAATGTTGAAAAGTCTCATATTGCGTACAACTTGCGCAAGGGGAAGAAGATTAAGTTGGAAGCAAATGAGGAGTGA 1338 0.4066 MAATFNCIRSINQSREDWKIKVCIVRLWSIAPHAVSNEPTSLEMVLQDEAGDRIGAFVRKGVARHHSRFLREGRAFILMQFGVVENSGSYRTTHHAFKVMFQYSTTVRPVVDNNKIHSHGFYFTPFSDIICGDSREEYLVDIIGRLAAVGEIQKVVVNGRQEQRLDILLDDDKRNYLEVTLWGALANDVLRYMKGPTHCPIIVIVQWCKIRVFKGIKKVSNSLFASHLFIHPTMDEVSTFVESVDTERGWYYIGCQKCAKKVLPDGDGFYCDKCNEFVKSVSLRFRVWCRVYDASSSTDVLIFDKEFAAFIKCSAAELKEMDVTGVCEGNGFDKIIGKKFLFRVRILEDYAKGLPCGIIVNGMTDDENTVKSFLDEWDQQAPSPKCVAQTPSIEKNESTEDSSSTITPSEVIEVGSANGDENVEKSHIAYNLRKGKKIKLEANEE 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0712 445 Gene3D - 255 373 IPR012340 -
Prci5g0712 445 MobiDBLite consensus disorder prediction 381 418 - -
Prci5g0712 445 CDD RPA1_DBD_A_like 19 107 - -
Prci5g0712 445 SUPERFAMILY Nucleic acid-binding proteins 121 247 IPR012340 -
Prci5g0712 445 Pfam Domain of unknown function DUF223 43 137 IPR003871 -
Prci5g0712 445 CDD RPA1_DBD_B_like 141 245 - -
Prci5g0712 445 SUPERFAMILY Nucleic acid-binding proteins 5 113 IPR012340 -
Prci5g0712 445 Gene3D - 115 249 IPR012340 -
Prci5g0712 445 CDD RPA1_DBD_C 241 349 IPR047192 -
Prci5g0712 445 PANTHER OS03G0429900 PROTEIN 5 246 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Prci5g0712 445 Pfam Replication factor-A C terminal domain 237 349 IPR013955 -
Prci5g0712 445 SUPERFAMILY Nucleic acid-binding proteins 239 351 IPR012340 -
Prci5g0712 445 Gene3D - 6 113 IPR012340 -
Prci5g0712 445 MobiDBLite consensus disorder prediction 383 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0712 Prci-Chr5 12849568 12851963 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0712 1 321 Core DNA Replication Machinery Family AT5G61000 19.531 4.41e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0712 - - pcin:129310753 908.672