Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0672 ATGGTGAGGGGAAAAACTCAGATGAAGCGAATCGAGAATGACACGAGCAGGCAAGTGACGTTCTCTAAGAGAAGGAATGGGCTGTTGAAGAAGGCGTTCGAGCTGTCTGTACTGTGTGATGCTGAAGTTGCACTCATAATTTTCTCGCCCAGAGGAAAGCTGTATGAATTCTCCAGTTCTAGTATAAACAAAACGGTTGAACGTTATCAGAAGAAAGTCAAGGACCTAAGTCTCTGCTCCAGAGGAATCCAAGATAACACACAGCATGATAAGCATGGAACCGTCGGCATACAAAAGAAGCTTGAGCATCTTGAAATTTCTAAAAGGAAGCTTTTGGGAGATTGTTTGGATGCATCTTCCGTTGAGGAGCTAAATCAGATAGAGAAACAGCTGGATCGAAGCTTAACCAAAATTAGGGCAAGAAAGAATCAATTGTTCAGGGAGCAGATTGAGCAGCTGAGGGAAGAGGAAAAATGTCTTCTGAAAGAAAATGAAAGGTTACGAGAGCAGTGTGGGATTGAAGAGCGAGGATCAACGAGGAAAGATGATGAGAACGAGGTGGAGACGGAGTTGTTCATAGGGCCACCAGAGAGACGAATCCCTTGA 606 0.4422 MVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSINKTVERYQKKVKDLSLCSRGIQDNTQHDKHGTVGIQKKLEHLEISKRKLLGDCLDASSVEELNQIEKQLDRSLTKIRARKNQLFREQIEQLREEEKCLLKENERLREQCGIEERGSTRKDDENEVETELFIGPPERRIP 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0672 201 SUPERFAMILY SRF-like 3 72 IPR036879 GO:0003677|GO:0046983
Prci5g0672 201 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci5g0672 201 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci5g0672 201 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci5g0672 201 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci5g0672 201 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 155 - -
Prci5g0672 201 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
Prci5g0672 201 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci5g0672 201 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci5g0672 201 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci5g0672 201 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Prci5g0672 201 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci5g0672 201 CDD MADS_MEF2_like 3 71 IPR033896 GO:0000977|GO:0045944
Prci5g0672 201 Coils Coil 124 170 - -
Prci5g0672 201 MobiDBLite consensus disorder prediction 172 201 - -
Prci5g0672 201 Pfam K-box region 90 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0672 Prci-Chr5 9931351 9943069 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0672 1 199 MADS-box Gene Family AT4G22950 61.611 7.72e-82 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci5g0672 K-box 2.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0672 - - gmx:100782713 280.411