Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0671 ATGGTGAGGGGAAAAACTCAGATGAAGCGAATCGAGAATGACACGAGCAGGCAAGTGACGTTCTCTAAGAGAAGGAATGGGCTGTTGAAGAAGGCGTTCGAGCTGTCTGTACTGTGTGATGCTGAAGTTGCACTCATAATTTTCTCGCCCAGAGGAAAGCTGTATGAATTCTCCAGTTCTAGATGCTACAGTATAAACAAAACGGTTGAACGTTATCAGAAGAAAGTCAAGGACCTAAGTCTCTGCTCCAGAGGAATCCAAGATAACACACAGCATGATAAGCATGGAACCGTCGGCATACAAAAGAAGCTTGAGCATCTTGAAATTTCTAAAAGGAAGCTTTTGGGAGATTGTTTGGATGCATCTTCCGTTGAGGAGCTAAATCAGATAGAGAAACAGCTGGATCGAAGCTTAACCAAAATTAGGGCAAGAAAGAATCAATTGTTCAGGGAGCAGATTGAGCAGCTGAGGGAAGAGGAAAAATGTCTTCTGAAAGAAAATGAAAGGTTACGAGAGCAGTGTGGGATTGAAGAGCGAGGATCAACGAGGAAAGATGATGAGAACGAGGTGGAGACGGAGTTGTTCATAGGGCCACCAGAGAGACGAATCCCTTGA 615 0.4423 MVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSRCYSINKTVERYQKKVKDLSLCSRGIQDNTQHDKHGTVGIQKKLEHLEISKRKLLGDCLDASSVEELNQIEKQLDRSLTKIRARKNQLFREQIEQLREEEKCLLKENERLREQCGIEERGSTRKDDENEVETELFIGPPERRIP 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0671 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci5g0671 204 Coils Coil 127 173 - -
Prci5g0671 204 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci5g0671 204 MobiDBLite consensus disorder prediction 175 204 - -
Prci5g0671 204 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Prci5g0671 204 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci5g0671 204 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 158 - -
Prci5g0671 204 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Prci5g0671 204 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci5g0671 204 FunFam Agamous-like MADS-box protein AGL13 13 82 - -
Prci5g0671 204 Pfam K-box region 94 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci5g0671 204 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Prci5g0671 204 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci5g0671 204 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci5g0671 204 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci5g0671 204 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0671 Prci-Chr5 9931351 9943073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0671 1 202 MADS-box Gene Family AT4G22950 60.748 7.99e-80 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci5g0671 K-box 3.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0671 - - gmx:100782713 275.018