Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0604 ATGGGGAGGCAACCTTGCTGTGACAAACTTGAAGTGAAGAAAGGACCATGGACTGCTGAAGAAGACAAGAAGCTCATCAGCTTCATTCTCACCAATGGTCACTGTTGCTGGCGAGCAGTTCCAAAGTTGGCCGGCCTACGGCGATGTGGCAAGAGCTGTAGGCTTCGTTGGACTAACTATCTCCGTCCTGACTTGAAGAGAGGCCTCCTCACTGATGCAGAAGAGAACCTTGTCATCGATCTCCATTCCCGCCTTGGCAACAGGTGGTCTATGATTGCAGCAAAATTACCAGGAAGAACAGACAATGAGATTAAAAACCATTGGAACACTCACATCAAGAAAAAGCTGCTTAAGATGGGTATTGATCCTGTTACCCATGAGCCTCTCAACAAAGAAGCTACTTCCCAGGATAATTCATCCCCTGCAGAACATTTGTCACAGTCTGACAGAGATCATCATCAGTTGATTGTTCACAATTCAAAGGAGAATTCAATCTCATCACCGACCGAAAATATATGTGGAGATGAACATCTTTCACAAGACATCAATCGTAGCGACGACCTTCTCTCGAACGACTTGCGGCCAGATGAAACTTCACTAGTGGATGCATTATGGGAAAGCATATCTTCTGATGCACAGAACACTAATTATGACTTGGCACTGTCATCTTGCGAGGATAGCAGTTCTTGGTTATTAGACTCTCAGGACTTTGGTGTTCATGATTTTAGTTTTAATTGCATCAATGAGATTGAGCCTCAGGCCCTGCAGACTCCAGCAATGGAGGTGAAGGAACATTAG 798 0.4499 MGRQPCCDKLEVKKGPWTAEEDKKLISFILTNGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTDAEENLVIDLHSRLGNRWSMIAAKLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKEATSQDNSSPAEHLSQSDRDHHQLIVHNSKENSISSPTENICGDEHLSQDINRSDDLLSNDLRPDETSLVDALWESISSDAQNTNYDLALSSCEDSSSWLLDSQDFGVHDFSFNCINEIEPQALQTPAMEVKEH 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0604 265 CDD SANT 16 61 IPR001005 -
Prci5g0604 265 MobiDBLite consensus disorder prediction 129 143 - -
Prci5g0604 265 Gene3D - 11 67 - -
Prci5g0604 265 PANTHER F14D16.11-RELATED 1 236 - -
Prci5g0604 265 SMART sant 13 63 IPR001005 -
Prci5g0604 265 SMART sant 66 114 IPR001005 -
Prci5g0604 265 FunFam MYB transcription factor 70 147 - -
Prci5g0604 265 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Prci5g0604 265 FunFam MYB transcription factor 11 67 - -
Prci5g0604 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Prci5g0604 265 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci5g0604 265 CDD SANT 71 112 IPR001005 -
Prci5g0604 265 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci5g0604 265 MobiDBLite consensus disorder prediction 128 150 - -
Prci5g0604 265 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Prci5g0604 265 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci5g0604 265 Gene3D - 70 154 - -
Prci5g0604 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0604 Prci-Chr5 8307408 8308992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0604 1 257 MYB Transcription Factor Family AT4G12350 52.083 8.10e-95 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci5g0604 Myb_DNA-binding 3.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0604 K09422 - gmx:100800360 374.785