Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0580 ATGTCATCCTCTTCCACTACTCATCCCACTTCTGCTACTTCCTCTGCCTTATCTCAGCTGGACCACTTCTCTACTTCTTCCGACCAGCTGTGTTATGTCCACTGCAACCTTTGTGACACTGTCCTCGCTGTGAGTGTTCCTTGCACGAGCTTGTTCAAGACTGTGACTGTGCGATGCGGCCATTGCACCAACCTGCTTCCGGTGATAGTGAACATGAGTGGATTGCTTCTGCAATCGCCAAATCAGTTTCACTTGTCTAACTCTTTCTTCTCTCCTCCTCCTCCTCCGTCTCTTAACATCCTGGAGGAGATGCCGAACTCATCAAACCATAATTACTTCTCTGTGCCTCCTACTCCTAGGGTTGCAGCTGATGAGCTTCCACGCCCACCACTCATAAATAGACCCCCTGAGAAGAGGCAGAGAGTCCCATCTGCATACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGCAAATCCTGATATAACCCACAGAGAAGCCTTCAGCGCAGCTGCCAAGAATTGGGCCCACTTCCCTCACATACACTATGGTCTCATGCCTGATCAGACTGTGAAGAAGACAAATGTGTGCCAGCAGGAACGAGATGACGACGTTTGCATCAAAGATGGACTTTTCTCCTCGGCTAATGTTGGTGTTTCTCCCTATTAA 675 0.4919 MSSSSTTHPTSATSSALSQLDHFSTSSDQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVIVNMSGLLLQSPNQFHLSNSFFSPPPPPSLNILEEMPNSSNHNYFSVPPTPRVAADELPRPPLINRPPEKRQRVPSAYNRFIKDEIQRIKSANPDITHREAFSAAAKNWAHFPHIHYGLMPDQTVKKTNVCQQERDDDVCIKDGLFSSANVGVSPY 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0580 224 Gene3D High mobility group box domain 132 184 IPR036910 -
Prci5g0580 224 Pfam YABBY protein 26 187 IPR006780 GO:0007275
Prci5g0580 224 CDD HMG-box_SF 141 177 - -
Prci5g0580 224 PANTHER PROTEIN YABBY 6-RELATED 5 197 IPR006780 GO:0007275
Prci5g0580 224 FunFam Axial regulator YABBY 132 203 - -
Prci5g0580 224 SUPERFAMILY HMG-box 131 181 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0580 Prci-Chr5 7783423 7786350 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0580 37 222 C2C2-YABBY Transcription Factor Family AT4G00180 56.938 2.21e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Prci5g0580 YABBY 4e-67 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0580 K25796 - gmx:100798441 298.901