Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0538 ATGGTGAAGATAGCTGTTGGTACCTTGGGTGACTCTTTCAGTGTCGCTGCCTTTAAGGCTTATACAGCAGAGTTCATTGCCACTTTGCTTTTCGTCTTCGCCGGCGTTGGATCCGCCATCGCTTACGGTGCCCTCACGAAGGATGCAGCGTTAGATCCGGCGGGGCTTGTGGCGGTGGCGGTGGCGCATGCATTCGCACTGTTCGTCGGAGTGTCCGTAGCAGCCAACATCTCCGGTGGCCATTTGAATCCAGCTGTCACTTTTGGATTGGCCATTGGAGGCAACATCACCATCTTGACTGCTATCTTGTATTGGGTTCACCAATTGTTGGGATCTATGGTCGCTTGCTTCCTCCTCAAATTTGTCACCAATGCCCCGACCGTTCCGATCCATGGACTTGCTTCAGGAGTGGGTATTTTTGAAGGCATAGTGTTTGAAATTGTTGCCACCTTTGGACTTGTTTACACTGTCTATGCCACAGCAGCTGACCCTAAAAAAGGCTCATTGGGCATTATTGCGCCTATTGCAATTGGCTTCATTGTTGGTGCCAACATCTTGGCCGCTGGCCCATTCAGTGGCGGTTCAATGAACCCAGCCCGTTCGTTCGGCCCGGCTATTGTATCTGGGGACTTCACCAACTATTGGATCTATTGGGTTGGCCCATTGATCGGTGGCGGTTTGGCCGGTTTGATCTATGGCGATGTATTCATCGGCTCATATGCTCCCGTCCCTACCTCTGAAAACTACCCTTGA 753 0.5153 MVKIAVGTLGDSFSVAAFKAYTAEFIATLLFVFAGVGSAIAYGALTKDAALDPAGLVAVAVAHAFALFVGVSVAANISGGHLNPAVTFGLAIGGNITILTAILYWVHQLLGSMVACFLLKFVTNAPTVPIHGLASGVGIFEGIVFEIVATFGLVYTVYATAADPKKGSLGIIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAIVSGDFTNYWIYWVGPLIGGGLAGLIYGDVFIGSYAPVPTSENYP 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0538 250 Gene3D Glycerol uptake facilitator protein. 2 241 IPR023271 -
Prci5g0538 250 CDD MIP 19 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci5g0538 250 PANTHER AQUAPORIN-8 4 238 IPR034294 -
Prci5g0538 250 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci5g0538 250 FunFam Probable aquaporin TIP1-1 2 248 - -
Prci5g0538 250 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci5g0538 250 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Prci5g0538 250 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci5g0538 250 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci5g0538 250 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci5g0538 250 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci5g0538 250 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci5g0538 250 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci5g0538 250 SUPERFAMILY Aquaporin-like 15 239 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0538 Prci-Chr5 6931829 6934544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0538 1 247 Major Intrinsic Protein MIP AT5G47450 77.733 8.26e-137 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0538 K09873 - csv:101203925 399.823