Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0519 ATGGAGAAGCACAAATGCAAGCTCTGTTCCAGAACCTTCGCTCATGGCAGATCGCTCGGTGGCCACATGAAGGCCCATTTCGCCGCTCTCCCTCTTCCTCCCAAGCCTCAACCGCCACCACCGTCTCCGCCTTCCCCTTCCTTCTCTTCTTCTTCCTCACAAGATTCCGACGACAAGGCTCTCATTTACGCCTTGAGAGAAAACCCCAAGAAAAGCTTCAAGCTTGCAGATCCTGAGTTCTCTTTCGTCGATACTGGCTCTGTTATCGTTCAAGACCGAGAGAGCGAGACCGAGTCAAAGAACCCAACTCGCCTTCGATCCAAGCGAACAAGAACAACCCTGAGATCGGAGTCGGCGTCGGCATCAGCCAAGAAGCCTAAACCCAGTCTTTCCGGGTCGCCCGCCGAACCTGAACCGGTGAGCTCGGTTTCTGAAACTAGCACTGAAGAAGATGTCGCTATGTGTCTCATTATGCTGTCGAGAGACAAATGGAAGAGAAACGCCGTGAAGGAAGAAGATCGAGGACGAGACGACAAATCGAAGCGATTCGAGGAGATCAAGGTGAAGAAAGGAGTTCGCGGGAAGCATCAGTGCGAGAAATGCAGAAAAACGTTTCGATCGTTTCGAGCATTGGGGAATCATAGAAACGTGTGTTTTCTTGATGAAGAAGCAGCAGCAGCAGTTGCTAGAAACGCAGGTAAAAACAAGAACACGAACAACAACAGCAGCAACAATGATTCGATTTTCGAATGCCCATTTTGTTATAAAGTGTTTGGGTCAGGACAAGCACTTGGGGGACACAAGAGGTCTCATCTCGTACAATCATCATCGTCAACCTTGAACGATTCTGCAAGATTGATGATAAAGGAAAGCTGCTTCATAGATCTCAACTTACCAGCTCCAGCAGCAGCAGAAGATGAACTCAGTGTGGTCTCTGATGCATAA 945 0.491 MEKHKCKLCSRTFAHGRSLGGHMKAHFAALPLPPKPQPPPPSPPSPSFSSSSSQDSDDKALIYALRENPKKSFKLADPEFSFVDTGSVIVQDRESETESKNPTRLRSKRTRTTLRSESASASAKKPKPSLSGSPAEPEPVSSVSETSTEEDVAMCLIMLSRDKWKRNAVKEEDRGRDDKSKRFEEIKVKKGVRGKHQCEKCRKTFRSFRALGNHRNVCFLDEEAAAAVARNAGKNKNTNNNSSNNDSIFECPFCYKVFGSGQALGGHKRSHLVQSSSSTLNDSARLMIKESCFIDLNLPAPAAAEDELSVVSDA 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0519 314 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Prci5g0519 314 Gene3D Classic Zinc Finger 193 271 - -
Prci5g0519 314 SMART c2h2final6 196 216 IPR013087 -
Prci5g0519 314 SMART c2h2final6 4 26 IPR013087 -
Prci5g0519 314 SMART c2h2final6 249 271 IPR013087 -
Prci5g0519 314 SUPERFAMILY beta-beta-alpha zinc fingers 196 271 IPR036236 -
Prci5g0519 314 MobiDBLite consensus disorder prediction 92 148 - -
Prci5g0519 314 MobiDBLite consensus disorder prediction 28 62 - -
Prci5g0519 314 MobiDBLite consensus disorder prediction 31 47 - -
Prci5g0519 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 249 276 IPR013087 -
Prci5g0519 314 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 314 IPR044303 GO:0006355
Prci5g0519 314 MobiDBLite consensus disorder prediction 92 113 - -
Prci5g0519 314 Pfam C2H2-type zinc finger 4 26 - -
Prci5g0519 314 Pfam C2H2-type zinc finger 249 271 - -
Prci5g0519 314 Pfam C2H2-type zinc finger 196 215 - -
Prci5g0519 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Prci5g0519 314 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Prci5g0519 314 ProSitePatterns Zinc finger C2H2 type domain signature. 251 271 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0519 Prci-Chr5 6803140 6804463 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0519 1 311 C2H2 Transcription Factor Family AT3G60580 37.462 2.19e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci5g0519 zf-C2H2_6 1.3e-10 CL0361