Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0489 ATGGCACCACAAAGCCAGACTGAATCACCCACTAGGAAATTCATTAACAGAGGAGCTTGGACTCCCGAGGAAGATCGAAAGCTTGCTCAATGCATTGAAGTCCATGGAGCTAAGAGGTGGAAGAGTATTGCTATTAAATCAGGTTTAAACAGATGTGGCAAGAGTTGCAGGCTGAGATGGCTCAACTATCTAAGGCCAAACATCAAGAGAGGCAACATTTCACTTGAAGAAGAAGATTTAATTCTAAGGCTTCACAAACTCCTCGGAAATAGGTGGTCCTTGATAGCTGGGAGACTTCCAGGACGAACAGACAATGAAATTAAAAACTACTGGAATTCTCATTTGTGCAAAAAAGTTAACAGTGAAGAGAAGAAGAAGAAGCCAAACACTTCAACCCCACAAGAAAGCACACCAAGAAATACTTGGGATAGTGCTCTTGCGGAGAATCCTGAGGAAGCCATTAATGGAATTGGAACTGTGAACTCAGAAGTTAGCTTTGATGTGAATGAGTTTCTTGATTTCTCTCCCAAAGAAGGACCCTTTCATGAGTTGGATTGGGTGAACAAGTATCTAGAACTTGATGAGCTTCCAGGAAGCAGTGGGGAATTTTGA 612 0.4216 MAPQSQTESPTRKFINRGAWTPEEDRKLAQCIEVHGAKRWKSIAIKSGLNRCGKSCRLRWLNYLRPNIKRGNISLEEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNSEEKKKKPNTSTPQESTPRNTWDSALAENPEEAINGIGTVNSEVSFDVNEFLDFSPKEGPFHELDWVNKYLELDELPGSSGEF 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0489 203 CDD SANT 74 115 IPR001005 -
Prci5g0489 203 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Prci5g0489 203 FunFam Transcription factor TT2 73 148 - -
Prci5g0489 203 Gene3D - 74 146 - -
Prci5g0489 203 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 12 139 - -
Prci5g0489 203 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Prci5g0489 203 CDD SANT 19 64 IPR001005 -
Prci5g0489 203 SMART sant 16 66 IPR001005 -
Prci5g0489 203 SMART sant 69 117 IPR001005 -
Prci5g0489 203 MobiDBLite consensus disorder prediction 121 142 - -
Prci5g0489 203 SUPERFAMILY Homeodomain-like 16 111 IPR009057 -
Prci5g0489 203 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Prci5g0489 203 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Prci5g0489 203 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Prci5g0489 203 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 68 IPR017930 -
Prci5g0489 203 Gene3D - 17 69 - -
Prci5g0489 203 FunFam MYB-related transcription factor 16 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0489 Prci-Chr5 6442372 6444935 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0489 12 124 MYB Transcription Factor Family AT5G52600 65.487 5.80e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci5g0489 Myb_DNA-binding 3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0489 K09422 - gmx:100799575 261.922