Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0461 ATGGCCTACACACTTAGGCAGAGAAAGCAAAACACTAACTATGCGGATTCAGACAGTCCTGGAAGTGGTTCAATTGGTTCTGGTACAGACTATTTATCACGGAGAAGTAGCAGACCAAAAAAGAGAAGGAACTCAAGTGTAAATTTGAGTGCAAGGCGTCGACGAGGTCGAACCTCAAAGAGGGCACAGGAAGTACAAAACAAGGAAGCCGGTGATGCTACAAGTTCAAACTTGAAAAATGGAACATTGACAGCTGAACAACAAAGTTCAAACAAAAAAACCATTCTATCATGGTTGATAGATTGCTGTGTTATCAAGAAGGGCGACCGAGTCATATACTCAAATGACATAAAGGAAAGTACAGATAAGAGAGGAAACATTGCCAGAGGTGGAATTCTCTGCTGCTGTTGCCAGAAGGAATATTCTGTGTGGGCCTTTGAGAAACATTGTGGAAGTGATCTTAATCAACCCTATGAACATATTTACCTCCTTGAAAAACAAATCTCTCTTTTGGAGTCCATGATGATTGCTTGGCATGAGAACAGTGAACTGAAACACCAGGAAACACATTTCTTTGTACCCAAGAGAACTGCAGGAGACAAAAATGATTATGCTTGCCCTATTTGCGGAGATGGGGGAGACTTGATCTGCTGTGACAAGTGCCCCTCCGCATTTCATTTAAACTGTTTAAATATGGAGAGGCTTCCTCAAGGTGAATGGTTATGTCCTTATTGTGCTTGCAAACATTGTGGCCTTGGTGATGAAAGGAAGCAATTGATTCCGTGCTTCCAATGTAACAAAAAATTTCACTGGGGATGCTTTAAGGAATTTGAGAAAGAAGCTCTTAAGGATGCCTTAGAACTTGACTGTTCCAGTTTATATTGTGGAAGAAGTTGTAGAAAGACATATGAGAAATTGGAGAATTTTATTGGGCTCCGGAACAAACTTGATGAAAGCTACTCTTGGAGAGTTATTCGTAAAATGGAAAGGACGTCAACTGTCACTAAACACCAATATTTTGAAAATAATGCCAAGCTTGCAATTACGCGGAAATTAATGGATGAAGCTTTTGAGACAATAGTTGACAAATACACAGGCGTCAATGTGATTCAAAGTGTACTATACAGTCTTCGGTCAAACTTAACCAGGGTTAATTATAGCCGTTTCTATACATTTATACTGGAAAAAGATGATGAGATTGTTTGTGCTGCTACTGTGAGAATCCATGGGCAGAGGCTTGCAGATATGCCCTTTATAGCCACACACACAGCATTTCTAAGACAAGGATACTGTGCGTACCTTCTGGGAGTGATGGAATCGATCCTGTTCAGTCTTGGAGTCGAAAACTTGATAATCCCGTCTATTCAGGAGACCGTCAGCATGTGGGGAATAAAGTTTGGATTCCATGATCCGAGTATAGAGTTGAAAAGAGAAATTACCACCTATAACATTTTGATGTTTTTTCAATCTATAATGCTGCGCAAGGACTTAACCATAAAGAAACCAGAATCAGATGATGGTGACAAAAAGGAGGAGAGACAAACTGACAATCAGAATGTCCTGGAACCTCAAAATAATCCTGTTGACCGATCCCTTCTAGACCTCAACATGCCCCCTCCTGAAGAATGCATGATGGCTGTGGAAGATGATGTATAG 1656 0.4058 MAYTLRQRKQNTNYADSDSPGSGSIGSGTDYLSRRSSRPKKRRNSSVNLSARRRRGRTSKRAQEVQNKEAGDATSSNLKNGTLTAEQQSSNKKTILSWLIDCCVIKKGDRVIYSNDIKESTDKRGNIARGGILCCCCQKEYSVWAFEKHCGSDLNQPYEHIYLLEKQISLLESMMIAWHENSELKHQETHFFVPKRTAGDKNDYACPICGDGGDLICCDKCPSAFHLNCLNMERLPQGEWLCPYCACKHCGLGDERKQLIPCFQCNKKFHWGCFKEFEKEALKDALELDCSSLYCGRSCRKTYEKLENFIGLRNKLDESYSWRVIRKMERTSTVTKHQYFENNAKLAITRKLMDEAFETIVDKYTGVNVIQSVLYSLRSNLTRVNYSRFYTFILEKDDEIVCAATVRIHGQRLADMPFIATHTAFLRQGYCAYLLGVMESILFSLGVENLIIPSIQETVSMWGIKFGFHDPSIELKREITTYNILMFFQSIMLRKDLTIKKPESDDGDKKEERQTDNQNVLEPQNNPVDRSLLDLNMPPPEECMMAVEDDV 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0461 551 MobiDBLite consensus disorder prediction 36 59 - -
Prci5g0461 551 PANTHER PHD FINGER PROTEIN 12 43 514 IPR042163 GO:0003714|GO:0045892
Prci5g0461 551 MobiDBLite consensus disorder prediction 68 86 - -
Prci5g0461 551 MobiDBLite consensus disorder prediction 501 540 - -
Prci5g0461 551 SMART PHD_3 247 300 IPR001965 -
Prci5g0461 551 SMART PHD_3 205 246 IPR001965 -
Prci5g0461 551 MobiDBLite consensus disorder prediction 1 86 - -
Prci5g0461 551 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 382 469 IPR016181 -
Prci5g0461 551 Pfam PHD-finger 206 248 IPR019787 -
Prci5g0461 551 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 256 IPR013083 -
Prci5g0461 551 MobiDBLite consensus disorder prediction 1 33 - -
Prci5g0461 551 ProSiteProfiles Zinc finger PHD-type profile. 203 248 IPR019787 -
Prci5g0461 551 Pfam Tify domain binding domain 125 175 IPR032308 -
Prci5g0461 551 CDD PHD2_CHD_II 206 245 - -
Prci5g0461 551 SUPERFAMILY FYVE/PHD zinc finger 198 246 IPR011011 -
Prci5g0461 551 MobiDBLite consensus disorder prediction 501 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0461 Prci-Chr5 6057963 6068842 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0461 89 497 PHD Transcription Factor Family AT4G14920 38.942 5.43e-95 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Prci5g0461 TDBD 1.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0461 - - pcin:129311154 1114.37