Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0444 ATGACCAACAATTCAGACCGGCGATGCACACCACTTTGGCGCAATGGGCCACCAGAGAAGCCAGTGCTATGCAATGCATGTGGATCTCGATGGAGAACTAAGGGAACCCTTGCAAACTATACCCCTTTACATGCTAGGACAGAGACTGATGATTATGAGGACCAAAGGCTTTCTAGGGCAAGGAACATAACATTAAATAAGAACAAAGAAGTGAAACTGCTCAAACGAAAGCTGAACCATGATAATTTAGTACCTGGTTGGGTTGTCCCTGATTACAATCAAGGATTTCAAAAGGTTATAGATGAAGATGCAAGCAATAGATCAAGTTCAGGATCAGCTGTTTCTAACTCAGAGAGCTGTGCTCAGTTTGTAGGAACAGATGCTAGTGACTTGACAGGTCCTGCTCAGTCAGTGGTGTGGGATGCCACAGTGCCCTCAAAAAAGAGGACCTGCGTGAACCGTCAAAAGCCATCTCCTGTTGAGAAGCTCACAAAAGATTTATGTACTATTCTTCATGAACAACAGTCCTATTTCTCTGCGTCTTCTGAAGAGGATCTTATTTTTGAAAGTGAAACACCAATGGTCTCTGTTGAGATAGGACATGGAAGTGTTCTCATTAGGCATCCCAGCTCTATAGCCCGTGAGGAAGAATCTGAGGCTAGCTCCCTTTCATTTGATAACAAACATTGCCCAACAAGTGAGGCGTATTCATGCTCTGGTGCCATTGATATGCATAATGATTTCACTGGCATGAACTTTCCATCTCTGGGGGTTGAAAATATCAACTACTCTGCTAGTCAAGGAATTCAGCAGGAGAAACTTAAAAGGGAGCCTGAAACTTCACAAATCCTTGGATATCGTGATTCACCACTGTGCTCAATAGATTTAATTGATGTTGTCAACCATGAGGTCTTCATGAGGAACATGACAAATGAGGAGCAGCAAAAATTACTGAAATGTCTCCCTGCAGTTGATACTGCTAAACTTCCTGACAGCCTTAAAAGCATGTTCAACAGCTCTCAGTTCAGAAAGAACTTAACTTACTTTCAACAGCTTCTTGGGGAAGGTGTCTTTGATACCTCTTCATCGGGGGCAAACTCTGAAGACTGCCAGGCTTTGGAAAGGCTTGCATTATCTGATTTTTCACAGTCAAAATGGGTTGAACAATATGATTTACTTAAGGGACATAAAAATCAGGACGACAATCCTGTTGCTCTTGGATGTACTGGCACTGCATCAAGTAATGCTGCAAATGAGAACAGATTGCGTGACATCTCAAAACAAAGTTTTCCTGAACTGAAGTCAACAGTTAGAAGTCCCAAAAGGGTGATCATGATGAAGACTGGCAGTGAAGGCAAGGAAGTCTTTGAAGATGGCTATTGCTTCAGTCCAAAAAGCCTAATAGCTCTGCCGGCTGATGGCAGCCCATGTATGCTGGATTCTTTCAACTTCGTCGATGAGAGTTCCGATCAAGATCTGCTGCTTGAAGTGCGATCTAACAGCTCTTTTCCAGAAGCAGAACTGCTGCATCCAACCTTAAGATTTGGTGCTCAGCCAAGCACTAGCAGTAGCTTGGCATACCAGCATGTTGCCCATTACTGA 1602 0.4332 MTNNSDRRCTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARTETDDYEDQRLSRARNITLNKNKEVKLLKRKLNHDNLVPGWVVPDYNQGFQKVIDEDASNRSSSGSAVSNSESCAQFVGTDASDLTGPAQSVVWDATVPSKKRTCVNRQKPSPVEKLTKDLCTILHEQQSYFSASSEEDLIFESETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSFDNKHCPTSEAYSCSGAIDMHNDFTGMNFPSLGVENINYSASQGIQQEKLKREPETSQILGYRDSPLCSIDLIDVVNHEVFMRNMTNEEQQKLLKCLPAVDTAKLPDSLKSMFNSSQFRKNLTYFQQLLGEGVFDTSSSGANSEDCQALERLALSDFSQSKWVEQYDLLKGHKNQDDNPVALGCTGTASSNAANENRLRDISKQSFPELKSTVRSPKRVIMMKTGSEGKEVFEDGYCFSPKSLIALPADGSPCMLDSFNFVDESSDQDLLLEVRSNSSFPEAELLHPTLRFGAQPSTSSSLAYQHVAHY 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0444 533 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 287 398 IPR044867 -
Prci5g0444 533 PANTHER OSJNBB0038F03.10 PROTEIN 10 528 IPR044589 -
Prci5g0444 533 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 8 40 - -
Prci5g0444 533 CDD ZnF_GATA 10 48 IPR000679 GO:0006355|GO:0043565
Prci5g0444 533 Gene3D - 3 79 IPR013088 GO:0006355|GO:0008270
Prci5g0444 533 SMART GATA_3 3 48 IPR000679 GO:0006355|GO:0043565
Prci5g0444 533 Pfam Asx homology domain 271 363 IPR028020 -
Prci5g0444 533 Pfam GATA zinc finger 10 36 IPR000679 GO:0006355|GO:0043565
Prci5g0444 533 Gene3D - 286 384 IPR038108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0444 Prci-Chr5 5888220 5894533 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0444 10 510 C2C2-Gata Transcription Factor Family AT4G17570 50.391 7.60e-138 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Prci5g0444 ASXH 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0444 - - gmx:100798504 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0754 10 5210376 5217325 Prci5g0444 5 5888220 5894533 CCT