Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0443 ATGGTTAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGCAATGGGCCACCAGAGAAGCCAGTGCTATGCAATGCATGTGGATCTCGATGGAGAACTAAGGGAACCCTTGCAAACTATACCCCTTTACATGCTAGGACAGAGACTGATGATTATGAGGACCAAAGGCTTTCTAGGGCAAGGAACATAACATTAAATAAGAACAAAGAAGTGAAACTGCTCAAACGAAAGCTGAACCATGATAATTTAGTACCTGGTTGGGTTGTCCCTGATTACAATCAAGGATTTCAAAAGGTTATAGATGAAGATGCAAGCAATAGATCAAGTTCAGGATCAGCTGTTTCTAACTCAGAGAGCTGTGCTCAGTTTGTAGGAACAGATGCTAGTGACTTGACAGGTCCTGCTCAGTCAGTGGTGTGGGATGCCACAGTGCCCTCAAAAAAGAGGACCTGCGTGAACCGTCAAAAGCCATCTCCTGTTGAGAAGCTCACAAAAGATTTATGTACTATTCTTCATGAACAACAGTCCTATTTCTCTGCGTCTTCTGAAGAGGATCTTATTTTTGAAAGTGAAACACCAATGGTCTCTGTTGAGATAGGACATGGAAGTGTTCTCATTAGGCATCCCAGCTCTATAGCCCGTGAGGAAGAATCTGAGGCTAGCTCCCTTTCATTTGATAACAAACATTGCCCAACAAGTGAGGCGTATTCATGCTCTGGTGCCATTGATATGCATAATGATTTCACTGGCATGAACTTTCCATCTCTGGGGGTTGAAAATATCAACTACTCTGCTAGTCAAGGAATTCAGCAGGAGAAACTTAAAAGGGAGCCTGAAACTTCACAAATCCTTGGATATCGTGATTCACCACTGTGCTCAATAGATTTAATTGATGTTGTCAACCATGAGGTCTTCATGAGGAACATGACAAATGAGGAGCAGCAAAAATTACTGAAATGTCTCCCTGCAGTTGATACTGCTAAACTTCCTGACAGCCTTAAAAGCATGTTCAACAGCTCTCAGTTCAGAAAGAACTTAACTTACTTTCAACAGCTTCTTGGGGAAGGTGTCTTTGATACCTCTTCATCGGGGGCAAACTCTGAAGACTGCCAGGCTTTGGAAAGGCTTGCATTATCTGATTTTTCACAGTCAAAATGGGTTGAACAATATGATTTACTTAAGGGACATAAAAATCAGGACGACAATCCTGTTGCTCTTGGATGTACTGGCACTGCATCAAGTAATGCTGCAAATGAGAACAGATTGCGTGACATCTCAAAACAAAGTTTTCCTGAACTGAAGTCAACAGTTAGAAGTCCCAAAAGGGTGATCATGATGAAGACTGGCAGTGAAGGCAAGGAAGTCTTTGAAGATGGCTATTGCTTCAGTCCAAAAAGCCTAATAGCTCTGCCGGCTGATGGCAGCCCATGTATGCTGGATTCTTTCAACTTCGTCGATGAGAGTTCCGATCAAGATCTGCTGCTTGAAGTGCGATCTAACAGCTCTTTTCCAGAAGCAGAACTGCTGCATCCAACCTTAAGATTTGGTGCTCAGCCAAGCACTAGCAGTAGCTTGGCATACCAGCATGTTGCCCATTACTGA 1617 0.4329 MVKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARTETDDYEDQRLSRARNITLNKNKEVKLLKRKLNHDNLVPGWVVPDYNQGFQKVIDEDASNRSSSGSAVSNSESCAQFVGTDASDLTGPAQSVVWDATVPSKKRTCVNRQKPSPVEKLTKDLCTILHEQQSYFSASSEEDLIFESETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSFDNKHCPTSEAYSCSGAIDMHNDFTGMNFPSLGVENINYSASQGIQQEKLKREPETSQILGYRDSPLCSIDLIDVVNHEVFMRNMTNEEQQKLLKCLPAVDTAKLPDSLKSMFNSSQFRKNLTYFQQLLGEGVFDTSSSGANSEDCQALERLALSDFSQSKWVEQYDLLKGHKNQDDNPVALGCTGTASSNAANENRLRDISKQSFPELKSTVRSPKRVIMMKTGSEGKEVFEDGYCFSPKSLIALPADGSPCMLDSFNFVDESSDQDLLLEVRSNSSFPEAELLHPTLRFGAQPSTSSSLAYQHVAHY 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0443 538 Gene3D - 3 84 IPR013088 GO:0006355|GO:0008270
Prci5g0443 538 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Prci5g0443 538 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 292 403 IPR044867 -
Prci5g0443 538 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Prci5g0443 538 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Prci5g0443 538 PANTHER OSJNBB0038F03.10 PROTEIN 7 533 IPR044589 -
Prci5g0443 538 Pfam Asx homology domain 276 368 IPR028020 -
Prci5g0443 538 Gene3D - 291 389 IPR038108 -
Prci5g0443 538 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 45 - -
Prci5g0443 538 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Prci5g0443 538 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0443 Prci-Chr5 5888220 5895106 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0443 1 515 C2C2-Gata Transcription Factor Family AT4G17570 51.331 3.34e-149 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Prci5g0443 ASXH 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0443 - - gmx:100798504 740.339