Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0423 ATGTCTCTCTCTGCTCTTTGTTCTCTTCTTCTTGCCACCACCTTGCTTCTCATGCAAAGTCTGACAGACGCTGCATGTTCCGATTGTTTTGTATCTTCTCGAGCATCCTATTACCCAAACTCTGATGAACAAGGAACAGATGTAGGTGCATGTGGATTTGGTTCCTTTGGTGCTACAGTCAATGGCGGGGACGTCTCAGCTGCTTCTAATCTCTATCGAGATGGTCTCGGCTGTGGTGCCTGTTACCAGGTGAGGTGTACGAACAGTGCTTATTGCTCAGACAATGGCGTGACGATAGTGATAACAGACCAAGGTTCAGGTGATAACACTGATTTCATTCTCAGCAAAAGAGCCTTCACTAAGATGGCTCAGACAAGTGATGCTGCTGCCACTTTGCTGTCTTTTGGTGTAGTTGATATCCAATACAGAAGAGTTTCATGCAGCTACCCGTCCAAAAACATCACTTTTAAGATACATGAAAGTAGCAGCAATCCCCATTACTTGGCCTTCGCCATAGAGTACCAACAGGGAAAGACAGATATCACTGCTCTGCAGCTCTGTGAGACTCAGAACTTTGTGTGCAAGTTACTGAGTAGGAGTTCCGGAGCTGTGTGGAGTGTAAACTCTCCTCCAAGTGGACCATTGTTAGTGAGGATGTTATTTAGTGATGATGATGGAGAAGACACGTGGGTTGTTCCTGTGAATAACATTCCTCAAGACTGGAAGGCTGGACAAACCTATGATTCTGGAGTTCAAGTGAACCAGTAG 768 0.4557 MSLSALCSLLLATTLLLMQSLTDAACSDCFVSSRASYYPNSDEQGTDVGACGFGSFGATVNGGDVSAASNLYRDGLGCGACYQVRCTNSAYCSDNGVTIVITDQGSGDNTDFILSKRAFTKMAQTSDAAATLLSFGVVDIQYRRVSCSYPSKNITFKIHESSSNPHYLAFAIEYQQGKTDITALQLCETQNFVCKLLSRSSGAVWSVNSPPSGPLLVRMLFSDDDGEDTWVVPVNNIPQDWKAGQTYDSGVQVNQ 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0423 255 CDD DPBB_EXLB_N 31 147 - -
Prci5g0423 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 152 IPR007112 -
Prci5g0423 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 249 IPR007117 -
Prci5g0423 255 Gene3D - 18 147 IPR036908 -
Prci5g0423 255 PANTHER EXPANSIN-B3 13 252 - -
Prci5g0423 255 Pfam Expansin C-terminal domain 154 233 IPR007117 -
Prci5g0423 255 SUPERFAMILY PHL pollen allergen 152 249 IPR036749 -
Prci5g0423 255 SUPERFAMILY Barwin-like endoglucanases 20 151 IPR036908 -
Prci5g0423 255 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576
Prci5g0423 255 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Prci5g0423 255 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Prci5g0423 255 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Prci5g0423 255 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Prci5g0423 255 Gene3D - 148 250 IPR036749 -
Prci5g0423 255 Pfam Lytic transglycolase 68 142 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0423 Prci-Chr5 5586438 5588659 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0423 1 251 Expansin Gene Family AT4G17030 42.857 1.75e-66 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0423 - - ccaj:109799868 413.69