Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0413 ATGCTGTTTCTATCACGTAATGTATGTTATCCCAACAAGATCATAGCAATTATTAACATAATTAAGGTGAGTACCAGCAGCCTGGGAAGTTTCAAAATTCTTGAGTATGCTAAGGACTTGCCCACCATCATGACTTCAAACAATCACTGCTTAAGCACCATGATGAAATGCATAGCGCTTGGCGCAGTTGAGTTCCTAAGCAAACCACTCTCTGAGGAAAAACTCAGGAATATCTGGCAGCATGTTGTTCACAAGGCATTCAACGCTGAGACAAGTGTCCTGCCTAAATCACAAGAGCCTGTCAAAGAATCTGTGGTATTGCAGCTCCAAACAGACAGCGGAGAGCATGGAAGTATAAATTTAGAGGAGTCTAGGTTCAGTGATGTTGAACATGAGCAGTCTGCAGGAAGTGACAAGTACCCAGCTCCTTCGACTCCTCAATTAAAACGGGGGGCAAGGTTAAGGGACGATGGAGATTGCCACGAACAAACTAATTGTTCAACCGAAAAAGAAAGTGAGGACCATGATGGGGAATCTAAATTTGTCGAAACTACATGCTGGGTTTTGAATGCTGAAGGTACTTGTCAACCTGTGAAACCTGAAAAGACTCAGAACATGGAGGATGAGAACCTGGCAAATGATTCTAAGAGTGAGAAAGCTGCTTCTCCACCTACACATGATGGTGTACTCAGCAACATTGAAGGTGATACTGTATCTCCAAATAAAGCAGGCGTTCATAGCAATTCCCGTCAGATCAGAACTAAGAAGAAGGTAGACTGGACACCTCAACTGCACAAAAAATTTGTGAAGGCAGTGGAACAATTAGGGGTTGATCAAGCAATTCCTTCTCGGATACTGGAGCTGATGAATGTGGAGGGCTTGACTAGGCATAATGTGGCAAGTCATCTTCAGAAATATAGAATGCAAAGGAGGCGAATCTTGCCAAAGGAAGATCGAAGATGGGTACAAAGACCAGTTGTGGCTTTCTCTCCATATTATTCTAACTGCACCCTGTCACCAGCTCCTGCGTATCCTATCTGGGGACAATCTGGCAGTCAACCAGCCAGTATGCATATTTGGGGCCCACCTGGTTATCCCCCGTGGCAGCCTACTGAAAGTTGGCACTGGAAGCCATATCATCAGATACATGCAGAGGCATGGGGTTGCCCAGTGTTGCCACCTCCTCAAAGTCCTTGTATTTCATACTCTCAAAATGCACCTGGATGGCACAATGCTAATGCAGCTAACTATAGCTCTAGCAAGTCTCAAAATTCCTGTGAATATCATCCAGCGGATGATATTGTCGACAAGGTGGTGAAGGAGGCAATTAGCAAGCCATGGCTACCAATGCCTTTAGGCCTCAAACCTCCTTCCATTGATTGTGTGTTGGCTGAACTCTCTAGGCAAGGCATTTCCACCATCCCTCCTTGTTCCAAGCATGCTACACTGGAACCAGAACTGAAACCCCAGTGA 1473 0.4515 MLFLSRNVCYPNKIIAIINIIKVSTSSLGSFKILEYAKDLPTIMTSNNHCLSTMMKCIALGAVEFLSKPLSEEKLRNIWQHVVHKAFNAETSVLPKSQEPVKESVVLQLQTDSGEHGSINLEESRFSDVEHEQSAGSDKYPAPSTPQLKRGARLRDDGDCHEQTNCSTEKESEDHDGESKFVETTCWVLNAEGTCQPVKPEKTQNMEDENLANDSKSEKAASPPTHDGVLSNIEGDTVSPNKAGVHSNSRQIRTKKKVDWTPQLHKKFVKAVEQLGVDQAIPSRILELMNVEGLTRHNVASHLQKYRMQRRRILPKEDRRWVQRPVVAFSPYYSNCTLSPAPAYPIWGQSGSQPASMHIWGPPGYPPWQPTESWHWKPYHQIHAEAWGCPVLPPPQSPCISYSQNAPGWHNANAANYSSSKSQNSCEYHPADDIVDKVVKEAISKPWLPMPLGLKPPSIDCVLAELSRQGISTIPPCSKHATLEPELKPQ 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0413 490 Gene3D - 27 97 - -
Prci5g0413 490 Gene3D - 252 313 - -
Prci5g0413 490 MobiDBLite consensus disorder prediction 126 179 - -
Prci5g0413 490 MobiDBLite consensus disorder prediction 197 252 - -
Prci5g0413 490 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 252 311 IPR017930 -
Prci5g0413 490 PANTHER TRANSCRIPTION ACTIVATOR GLK1 27 477 IPR044825 GO:0003700|GO:0045893
Prci5g0413 490 MobiDBLite consensus disorder prediction 150 179 - -
Prci5g0413 490 ProSiteProfiles Response regulatory domain profile. 1 83 IPR001789 GO:0000160
Prci5g0413 490 MobiDBLite consensus disorder prediction 232 248 - -
Prci5g0413 490 Pfam Myb-like DNA-binding domain 258 307 IPR001005 -
Prci5g0413 490 SUPERFAMILY Homeodomain-like 253 312 IPR009057 -
Prci5g0413 490 FunFam Two-component response regulator 251 314 - -
Prci5g0413 490 NCBIfam myb-like DNA-binding domain, SHAQKYF class 255 309 IPR006447 GO:0003677
Prci5g0413 490 SUPERFAMILY CheY-like 33 86 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0413 Prci-Chr5 5499466 5504529 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0413 18 478 Response Regulator Gene Family AT4G18020 49.593 7.30e-106 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Prci5g0413 Myb_DNA-binding 4.1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0413 - - gmx:100779121 613.224