Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0412 ATGACTTCAAACAATCACTGCTTAAGCACCATGATGAAATGCATAGCGCTTGGCGCAGTTGAGTTCCTAAGCAAACCACTCTCTGAGGAAAAACTCAGGAATATCTGGCAGCATGTTGTTCACAAGGCATTCAACGCTGAGACAAGTGTCCTGCCTAAATCACAAGAGCCTGTCAAAGAATCTGTGGTATTGCAGCTCCAAACAGACAGCGGAGAGCATGGAAGTATAAATTTAGAGGAGTCTAGGTTCAGTGATGTTGAACATGAGCAGTCTGCAGGAAGTGACAAGTACCCAGCTCCTTCGACTCCTCAATTAAAACGGGGGGCAAGGTTAAGGGACGATGGAGATTGCCACGAACAAACTAATTGTTCAACCGAAAAAGAAAGTGAGGACCATGATGGGGAATCTAAATTTGTCGAAACTACATGCTGGGTTTTGAATGCTGAAGGTACTTGTCAACCTGTGAAACCTGAAAAGACTCAGAACATGGAGGATGAGAACCTGGCAAATGATTCTAAGAGTGAGAAAGCTGCTTCTCCACCTACACATGATGGTGTACTCAGCAACATTGAAGGTGATACTGTATCTCCAAATAAAGCAGGCGTTCATAGCAATTCCCGTCAGATCAGAACTAAGAAGAAGGTAGACTGGACACCTCAACTGCACAAAAAATTTGTGAAGGCAGTGGAACAATTAGGGGTTGATCAAGCAATTCCTTCTCGGATACTGGAGCTGATGAATGTGGAGGGCTTGACTAGGCATAATGTGGCAAGTCATCTTCAGAAATATAGAATGCAAAGGAGGCGAATCTTGCCAAAGGAAGATCGAAGATGGGTACAAAGACCAGTTGTGGCTTTCTCTCCATATTATTCTAACTGCACCCTGTCACCAGCTCCTGCGTATCCTATCTGGGGACAATCTGGCAGTCAACCAGCCAGTATGCATATTTGGGGCCCACCTGGTTATCCCCCGTGGCAGCCTACTGAAAGTTGGCACTGGAAGCCATATCATCAGATACATGCAGAGGCATGGGGTTGCCCAGTGTTGCCACCTCCTCAAAGTCCTTGTATTTCATACTCTCAAAATGCACCTGGATGGCACAATGCTAATGCAGCTAACTATAGCTCTAGCAAGTCTCAAAATTCCTGTGAATATCATCCAGCGGATGATATTGTCGACAAGGTGGTGAAGGAGGCAATTAGCAAGCCATGGCTACCAATGCCTTTAGGCCTCAAACCTCCTTCCATTGATTGTGTGTTGGCTGAACTCTCTAGGCAAGGCATTTCCACCATCCCTCCTTGTTCCAAGCATGCTACACTGGAACCAGAACTGAAACCCCAGTGA 1344 0.4583 MTSNNHCLSTMMKCIALGAVEFLSKPLSEEKLRNIWQHVVHKAFNAETSVLPKSQEPVKESVVLQLQTDSGEHGSINLEESRFSDVEHEQSAGSDKYPAPSTPQLKRGARLRDDGDCHEQTNCSTEKESEDHDGESKFVETTCWVLNAEGTCQPVKPEKTQNMEDENLANDSKSEKAASPPTHDGVLSNIEGDTVSPNKAGVHSNSRQIRTKKKVDWTPQLHKKFVKAVEQLGVDQAIPSRILELMNVEGLTRHNVASHLQKYRMQRRRILPKEDRRWVQRPVVAFSPYYSNCTLSPAPAYPIWGQSGSQPASMHIWGPPGYPPWQPTESWHWKPYHQIHAEAWGCPVLPPPQSPCISYSQNAPGWHNANAANYSSSKSQNSCEYHPADDIVDKVVKEAISKPWLPMPLGLKPPSIDCVLAELSRQGISTIPPCSKHATLEPELKPQ 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0412 447 MobiDBLite consensus disorder prediction 107 136 - -
Prci5g0412 447 MobiDBLite consensus disorder prediction 189 205 - -
Prci5g0412 447 SUPERFAMILY Homeodomain-like 210 269 IPR009057 -
Prci5g0412 447 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 209 268 IPR017930 -
Prci5g0412 447 SUPERFAMILY CheY-like 2 43 IPR011006 -
Prci5g0412 447 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 434 IPR044825 GO:0003700|GO:0045893
Prci5g0412 447 MobiDBLite consensus disorder prediction 83 136 - -
Prci5g0412 447 FunFam Two-component response regulator 208 271 - -
Prci5g0412 447 ProSiteProfiles Response regulatory domain profile. 1 40 IPR001789 GO:0000160
Prci5g0412 447 Pfam Myb-like DNA-binding domain 215 264 IPR001005 -
Prci5g0412 447 NCBIfam myb-like DNA-binding domain, SHAQKYF class 212 266 IPR006447 GO:0003677
Prci5g0412 447 MobiDBLite consensus disorder prediction 154 209 - -
Prci5g0412 447 Gene3D - 209 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0412 Prci-Chr5 5499466 5505332 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0412 1 435 Response Regulator Gene Family AT4G18020 49.138 2.56e-98 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Prci5g0412 Myb_DNA-binding 3.7e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0412 - - gmx:100779121 583.178