Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0410 ATGGTTTGTACTGCTAAAGATATACAGGAGTGGATAGATTTTCCAAAGGGACTTAGGGTTCTTCTCCTTGATGGAGACAGCAGTTCTGCTTCGGAGATAAGAACAAAGCTGCAGGCCATGGACTATATCGTTTCTACATTCTGTGATGAGAACGAAGCCTTATCAGCAATCTCCAGCAGACCTGATGGCTTCCACGTTGCCATAGTGGAGGTGAGTACCAGCAGCCTGGGAAGTTTCAAAATTCTTGAGTATGCTAAGGACTTGCCCACCATCATGACTTCAAACAATCACTGCTTAAGCACCATGATGAAATGCATAGCGCTTGGCGCAGTTGAGTTCCTAAGCAAACCACTCTCTGAGGAAAAACTCAGGAATATCTGGCAGCATGTTGTTCACAAGGCATTCAACGCTGAGACAAGTGTCCTGCCTAAATCACAAGAGCCTGTCAAAGAATCTGTGGTATTGCAGCTCCAAACAGACAGCGGAGAGCATGGAAGTATAAATTTAGAGGAGTCTAGGTTCAGTGATGTTGAACATGAGCAGTCTGCAGGAAGTGACAAGTACCCAGCTCCTTCGACTCCTCAATTAAAACGGGGGGCAAGGTTAAGGGACGATGGAGATTGCCACGAACAAACTAATTGTTCAACCGAAAAAGAAAGTGAGGACCATGATGGGGAATCTAAATTTGTCGAAACTACATGCTGGGTTTTGAATGCTGAAGGTACTTGTCAACCTGTGAAACCTGAAAAGACTCAGAACATGGAGGATGAGAACCTGGCAAATGATTCTAAGAGTGAGAAAGCTGCTTCTCCACCTACACATGATGGTGTACTCAGCAACATTGAAGGTGATACTGTATCTCCAAATAAAGCAGGCGTTCATAGCAATTCCCGTCAGATCAGAACTAAGAAGAAGGTAGACTGGACACCTCAACTGCACAAAAAATTTGTGAAGGCAGTGGAACAATTAGGGGTTGATCAAGCAATTCCTTCTCGGATACTGGAGCTGATGAATGTGGAGGGCTTGACTAGGCATAATGTGGCAAGTCATCTTCAGAAATATAGAATGCAAAGGAGGCGAATCTTGCCAAAGGAAGATCGAAGATGGGTACAAAGACCAGTTGTGGCTTTCTCTCCATATTATTCTAACTGCACCCTGTCACCAGCTCCTGCGTATCCTATCTGGGGACAATCTGGCAGTCAACCAGCCAGTATGCATATTTGGGGCCCACCTGGTTATCCCCCGTGGCAGCCTACTGAAAGTTGGCACTGGAAGCCATATCATCAGATACATGCAGAGGCATGGGGTTGCCCAGTGTTGCCACCTCCTCAAAGTCCTTGTATTTCATACTCTCAAAATGCACCTGGATGGCACAATGCTAATGCAGCTAACTATAGCTCTAGCAAGTCTCAAAATTCCTGTGAATATCATCCAGCGGATGATATTGTCGACAAGGTGGTGAAGGAGGCAATTAGCAAGCCATGGCTACCAATGCCTTTAGGCCTCAAACCTCCTTCCATTGATTGTGTGTTGGCTGAACTCTCTAGGCAAGGCATTTCCACCATCCCTCCTTGTTCCAAGCATGCTACACTGGAACCAGAACTGAAACCCCAGTGA 1617 0.4583 MVCTAKDIQEWIDFPKGLRVLLLDGDSSSASEIRTKLQAMDYIVSTFCDENEALSAISSRPDGFHVAIVEVSTSSLGSFKILEYAKDLPTIMTSNNHCLSTMMKCIALGAVEFLSKPLSEEKLRNIWQHVVHKAFNAETSVLPKSQEPVKESVVLQLQTDSGEHGSINLEESRFSDVEHEQSAGSDKYPAPSTPQLKRGARLRDDGDCHEQTNCSTEKESEDHDGESKFVETTCWVLNAEGTCQPVKPEKTQNMEDENLANDSKSEKAASPPTHDGVLSNIEGDTVSPNKAGVHSNSRQIRTKKKVDWTPQLHKKFVKAVEQLGVDQAIPSRILELMNVEGLTRHNVASHLQKYRMQRRRILPKEDRRWVQRPVVAFSPYYSNCTLSPAPAYPIWGQSGSQPASMHIWGPPGYPPWQPTESWHWKPYHQIHAEAWGCPVLPPPQSPCISYSQNAPGWHNANAANYSSSKSQNSCEYHPADDIVDKVVKEAISKPWLPMPLGLKPPSIDCVLAELSRQGISTIPPCSKHATLEPELKPQ 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0410 538 Pfam Myb-like DNA-binding domain 306 355 IPR001005 -
Prci5g0410 538 MobiDBLite consensus disorder prediction 245 300 - -
Prci5g0410 538 SMART REC_2 18 127 IPR001789 GO:0000160
Prci5g0410 538 MobiDBLite consensus disorder prediction 174 227 - -
Prci5g0410 538 FunFam Two-component response regulator-like APRR2 17 142 - -
Prci5g0410 538 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 525 IPR044825 GO:0003700|GO:0045893
Prci5g0410 538 Gene3D - 18 145 - -
Prci5g0410 538 MobiDBLite consensus disorder prediction 198 227 - -
Prci5g0410 538 MobiDBLite consensus disorder prediction 280 296 - -
Prci5g0410 538 FunFam Two-component response regulator 299 362 - -
Prci5g0410 538 SUPERFAMILY Homeodomain-like 301 360 IPR009057 -
Prci5g0410 538 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 300 359 IPR017930 -
Prci5g0410 538 SUPERFAMILY CheY-like 16 134 IPR011006 -
Prci5g0410 538 ProSiteProfiles Response regulatory domain profile. 19 131 IPR001789 GO:0000160
Prci5g0410 538 CDD REC_typeB_ARR-like 20 131 - -
Prci5g0410 538 Gene3D - 300 361 - -
Prci5g0410 538 NCBIfam myb-like DNA-binding domain, SHAQKYF class 303 357 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0410 Prci-Chr5 5499466 5506442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0410 1 526 Response Regulator Gene Family AT4G18020 50.977 4.60e-139 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Prci5g0410 Myb_DNA-binding 4.7e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0410 - - gmx:100779121 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0694 10 4626344 4632714 Prci5g0410 5 5499466 5506442 CCT